miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22946 5' -62.5 NC_005137.2 + 72345 1.09 0.000616
Target:  5'- uGCGCGAGCUGCGCCGCUCCGCGUGCAc -3'
miRNA:   3'- -CGCGCUCGACGCGGCGAGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 125120 0.66 0.58547
Target:  5'- aGCgGCGGGCcGCGCCGCUCgaaCGUcuugacaaUGCAc -3'
miRNA:   3'- -CG-CGCUCGaCGCGGCGAG---GCGc-------ACGU- -5'
22946 5' -62.5 NC_005137.2 + 100053 0.67 0.526141
Target:  5'- cGCGCGGcGCguucagcaugcuuUGUGCCGCggCGCGcgGCAc -3'
miRNA:   3'- -CGCGCU-CG-------------ACGCGGCGagGCGCa-CGU- -5'
22946 5' -62.5 NC_005137.2 + 96421 0.68 0.471034
Target:  5'- cGCGCG-GCgacGCGCC-CgCCGCGUuGCGu -3'
miRNA:   3'- -CGCGCuCGa--CGCGGcGaGGCGCA-CGU- -5'
22946 5' -62.5 NC_005137.2 + 62212 0.68 0.453019
Target:  5'- -aGCGAGUuUGCGCUGCcgcgaucugUCCGC-UGCAc -3'
miRNA:   3'- cgCGCUCG-ACGCGGCG---------AGGCGcACGU- -5'
22946 5' -62.5 NC_005137.2 + 49688 0.68 0.444154
Target:  5'- gGCGCGcGGCgguaacuacGCGCCGCUUgGCcgGUGUAg -3'
miRNA:   3'- -CGCGC-UCGa--------CGCGGCGAGgCG--CACGU- -5'
22946 5' -62.5 NC_005137.2 + 12096 0.68 0.432777
Target:  5'- aGUGCGAGUUGCGCUGCagaaacggUgacgguguuuaaagCGCGUGCc -3'
miRNA:   3'- -CGCGCUCGACGCGGCGa-------G--------------GCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 123108 0.69 0.418158
Target:  5'- uGCGCaaugGAGCUGCGCCG----GUGUGCAc -3'
miRNA:   3'- -CGCG----CUCGACGCGGCgaggCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 97997 0.69 0.4097
Target:  5'- gGCGUGGG-UGCGcCCGCcaaguggCCaGCGUGCAc -3'
miRNA:   3'- -CGCGCUCgACGC-GGCGa------GG-CGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 112227 0.72 0.264441
Target:  5'- uGCGCGcAGUgaugauugaacGCGgCGUUCCGCGUGCu -3'
miRNA:   3'- -CGCGC-UCGa----------CGCgGCGAGGCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 95612 0.72 0.276241
Target:  5'- uGCGCGAcguGCUGUuuaacgaGUCGUuuuuUCCGCGUGCGc -3'
miRNA:   3'- -CGCGCU---CGACG-------CGGCG----AGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 48767 0.71 0.309985
Target:  5'- gGCGCGAucguuggacGCgGCGCCGCacagCGUGUGCGg -3'
miRNA:   3'- -CGCGCU---------CGaCGCGGCGag--GCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 21227 0.69 0.384978
Target:  5'- aCGUGGGC-GaCGCUGCgggCCGCGUGUc -3'
miRNA:   3'- cGCGCUCGaC-GCGGCGa--GGCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 31713 0.69 0.384978
Target:  5'- aCGUGuGCacguucGCGUCGUUUCGCGUGCGu -3'
miRNA:   3'- cGCGCuCGa-----CGCGGCGAGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 112889 0.69 0.384978
Target:  5'- aCGCGGGCUGCGCguacccgaCGCUaguuuccgaaguUUGCGUGUAc -3'
miRNA:   3'- cGCGCUCGACGCG--------GCGA------------GGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 100284 0.77 0.118348
Target:  5'- uGgGCGAGCUGUGCCGCUucgaaaccCCGCuugGUGCu -3'
miRNA:   3'- -CgCGCUCGACGCGGCGA--------GGCG---CACGu -5'
22946 5' -62.5 NC_005137.2 + 87261 0.66 0.565823
Target:  5'- gGCGCuuGUUgGCGuuGUuaacggCCGCGUGCAc -3'
miRNA:   3'- -CGCGcuCGA-CGCggCGa-----GGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 97621 0.66 0.54635
Target:  5'- uGCGCGAGCgucaCGCCGCcacuaCCaUGUGCc -3'
miRNA:   3'- -CGCGCUCGac--GCGGCGa----GGcGCACGu -5'
22946 5' -62.5 NC_005137.2 + 89093 0.67 0.498714
Target:  5'- gGCGCGGGCgaaacGCGCgUGUUuaGCGUGUu -3'
miRNA:   3'- -CGCGCUCGa----CGCG-GCGAggCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 98202 0.67 0.498714
Target:  5'- uGCGCGAaaggcGCUGCuggacCCGCUcgcagcgcCCGaCGUGCAc -3'
miRNA:   3'- -CGCGCU-----CGACGc----GGCGA--------GGC-GCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.