miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 87475 0.67 0.918509
Target:  5'- --cAGCuGCGC-CGUUUCGCgaCGCGCUu -3'
miRNA:   3'- gauUUG-UGCGcGCAAAGCGg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 1425 0.67 0.918509
Target:  5'- uUAAACACGCGC-UUUUGCauuuUGUGCa -3'
miRNA:   3'- gAUUUGUGCGCGcAAAGCGg---GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 63633 0.67 0.918509
Target:  5'- -cGAGCACGUccgGUGUuggUUUGUCCGCGUUu -3'
miRNA:   3'- gaUUUGUGCG---CGCA---AAGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7292 0.67 0.918509
Target:  5'- --cAACACGuUGCGgucgcUUUGCCCGgGCa -3'
miRNA:   3'- gauUUGUGC-GCGCa----AAGCGGGCgCGg -5'
22953 3' -54.1 NC_005137.2 + 96292 0.67 0.918509
Target:  5'- -cGGACGCGUGCa-UUCGCCgacacgccggCGCGCa -3'
miRNA:   3'- gaUUUGUGCGCGcaAAGCGG----------GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 4439 0.67 0.918509
Target:  5'- ---uACACcCGCGUcgCGCaccuuCGCGCCg -3'
miRNA:   3'- gauuUGUGcGCGCAaaGCGg----GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 49684 0.67 0.912621
Target:  5'- -cAAugGCGCGCGg--CGguaacuaCGCGCCg -3'
miRNA:   3'- gaUUugUGCGCGCaaaGCgg-----GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 67823 0.67 0.906488
Target:  5'- uUAGGCAUGUGCugcaaUUUCGCaaGCGCa -3'
miRNA:   3'- gAUUUGUGCGCGc----AAAGCGggCGCGg -5'
22953 3' -54.1 NC_005137.2 + 35564 0.67 0.906488
Target:  5'- -aAGACACGCac----CGCCgGCGCCa -3'
miRNA:   3'- gaUUUGUGCGcgcaaaGCGGgCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 45262 0.67 0.906488
Target:  5'- --cGACGCGuCGCG---CGCCCGCGa- -3'
miRNA:   3'- gauUUGUGC-GCGCaaaGCGGGCGCgg -5'
22953 3' -54.1 NC_005137.2 + 98186 0.68 0.900114
Target:  5'- -aAGAUACGCGCGaguauaaaggUUGCCUgGCGCg -3'
miRNA:   3'- gaUUUGUGCGCGCaa--------AGCGGG-CGCGg -5'
22953 3' -54.1 NC_005137.2 + 63801 0.68 0.900114
Target:  5'- -cGGGCGCGaCGCGaugCGCgaCCGuCGCCg -3'
miRNA:   3'- gaUUUGUGC-GCGCaaaGCG--GGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 110791 0.68 0.900114
Target:  5'- aCUAAAagcgUACGCGC-UUUCGCaauCGaCGCCg -3'
miRNA:   3'- -GAUUU----GUGCGCGcAAAGCGg--GC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 88469 0.68 0.900114
Target:  5'- -gAGACugGCGCGgUUCaCCguCGCGCa -3'
miRNA:   3'- gaUUUGugCGCGCaAAGcGG--GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 61829 0.68 0.900114
Target:  5'- uUAAGCGCGUcuuugccgaGCGU---GUCUGCGCCa -3'
miRNA:   3'- gAUUUGUGCG---------CGCAaagCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 93465 0.68 0.900114
Target:  5'- -cGGGCACgGUGCG---CGCCaGCGCCg -3'
miRNA:   3'- gaUUUGUG-CGCGCaaaGCGGgCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7168 0.68 0.900114
Target:  5'- --cGugACGCGCGUg-CGCCacguuGUGCCc -3'
miRNA:   3'- gauUugUGCGCGCAaaGCGGg----CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 73775 0.68 0.899464
Target:  5'- --uGGCGCGgGCGUagccucgUUCGCCaCG-GCCu -3'
miRNA:   3'- gauUUGUGCgCGCA-------AAGCGG-GCgCGG- -5'
22953 3' -54.1 NC_005137.2 + 118101 0.68 0.894173
Target:  5'- -gAGACGCGUGCGgugcaacaaggugCGCaCCGUGaCCg -3'
miRNA:   3'- gaUUUGUGCGCGCaaa----------GCG-GGCGC-GG- -5'
22953 3' -54.1 NC_005137.2 + 55951 0.68 0.893501
Target:  5'- cCUGAACAcCGCGCGUUg-GCuuGgCGUg -3'
miRNA:   3'- -GAUUUGU-GCGCGCAAagCGggC-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.