miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 26819 0.72 0.689711
Target:  5'- ---cGCACGUGCGUgcgUCGUcguguUCGCGCUg -3'
miRNA:   3'- gauuUGUGCGCGCAa--AGCG-----GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 28369 0.66 0.94427
Target:  5'- -aAAACugGCGCGaggaCGaCUGCGUCg -3'
miRNA:   3'- gaUUUGugCGCGCaaa-GCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 28378 0.66 0.954478
Target:  5'- gCUAAACACGUGCucaaCGCUCGUuucuugcgcauuaucGCCc -3'
miRNA:   3'- -GAUUUGUGCGCGcaaaGCGGGCG---------------CGG- -5'
22953 3' -54.1 NC_005137.2 + 30014 0.66 0.939608
Target:  5'- uUAAGCGCG-GCGUUgagaaGCgCGCGaCCc -3'
miRNA:   3'- gAUUUGUGCgCGCAAag---CGgGCGC-GG- -5'
22953 3' -54.1 NC_005137.2 + 31241 0.66 0.94427
Target:  5'- uUGAACAUGgcCGCG--UCGUgCGCGCUc -3'
miRNA:   3'- gAUUUGUGC--GCGCaaAGCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 31807 0.73 0.638047
Target:  5'- gCUAuGCACaGCGUGgucgCGUCCGCGCg -3'
miRNA:   3'- -GAUuUGUG-CGCGCaaa-GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 32042 0.67 0.924153
Target:  5'- -----gGCGUGCGggUCGUCUGUGUa -3'
miRNA:   3'- gauuugUGCGCGCaaAGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 32799 0.66 0.939608
Target:  5'- -gGAACACaGCGuCGaauacgUGCCCGUGCg -3'
miRNA:   3'- gaUUUGUG-CGC-GCaaa---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 35152 0.66 0.939608
Target:  5'- --cGGCAUGCagGCcg-UUGCCCGuCGCCa -3'
miRNA:   3'- gauUUGUGCG--CGcaaAGCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 35284 0.67 0.922485
Target:  5'- -cAAugGCGCGUGUcaaaccuucgguguUgaccgCGUuuGCGCCa -3'
miRNA:   3'- gaUUugUGCGCGCA--------------Aa----GCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 35564 0.67 0.906488
Target:  5'- -aAGACACGCac----CGCCgGCGCCa -3'
miRNA:   3'- gaUUUGUGCGcgcaaaGCGGgCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 36195 0.66 0.94427
Target:  5'- --cAACAa-CGCuUUUaaCGCCCGCGCCc -3'
miRNA:   3'- gauUUGUgcGCGcAAA--GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 38803 0.68 0.879573
Target:  5'- --cAACGCGCGCc---UGCCCaGCGUCg -3'
miRNA:   3'- gauUUGUGCGCGcaaaGCGGG-CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 39810 0.69 0.832538
Target:  5'- --cAACACGCGUGcaaccaaaCG-CCGCGCCa -3'
miRNA:   3'- gauUUGUGCGCGCaaa-----GCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 39952 0.7 0.788139
Target:  5'- ---uGCACGCGUGUUggcCGCCauugucagcagUGUGCCa -3'
miRNA:   3'- gauuUGUGCGCGCAAa--GCGG-----------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 42425 0.7 0.797343
Target:  5'- -gGGACACGUnaUGUgucCGCCgCGCGCa -3'
miRNA:   3'- gaUUUGUGCGc-GCAaa-GCGG-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 42516 0.66 0.952872
Target:  5'- -----aGCGCGCuaaucgcUCGCCCGC-CCg -3'
miRNA:   3'- gauuugUGCGCGcaa----AGCGGGCGcGG- -5'
22953 3' -54.1 NC_005137.2 + 42834 0.66 0.939608
Target:  5'- uUAAAUACccgucgauuGCGCGcUUgGCgUCGCGCCa -3'
miRNA:   3'- gAUUUGUG---------CGCGCaAAgCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 43814 0.71 0.740136
Target:  5'- --cGGCACGaGCagc-CGCCCGCGCCc -3'
miRNA:   3'- gauUUGUGCgCGcaaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 43968 0.74 0.596574
Target:  5'- -cGGGCGCGgGCGgc-UGCUCGUGCCg -3'
miRNA:   3'- gaUUUGUGCgCGCaaaGCGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.