miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 1425 0.67 0.918509
Target:  5'- uUAAACACGCGC-UUUUGCauuuUGUGCa -3'
miRNA:   3'- gAUUUGUGCGCGcAAAGCGg---GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 1663 0.68 0.872267
Target:  5'- uUGAACaACGCGuCGg--CGCCgCGCGgCg -3'
miRNA:   3'- gAUUUG-UGCGC-GCaaaGCGG-GCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 1838 0.75 0.495685
Target:  5'- aCUAAGauuGCGCGCGUUgcugaCCGCGCCg -3'
miRNA:   3'- -GAUUUg--UGCGCGCAAagcg-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 2173 0.66 0.94427
Target:  5'- -cGAGCGCGCGCuucaucaaGUUUaGUuuGCGCg -3'
miRNA:   3'- gaUUUGUGCGCG--------CAAAgCGggCGCGg -5'
22953 3' -54.1 NC_005137.2 + 2432 0.71 0.759695
Target:  5'- ----uCACGCG-GUggccgacgUGCCCGCGCCc -3'
miRNA:   3'- gauuuGUGCGCgCAaa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 4439 0.67 0.918509
Target:  5'- ---uACACcCGCGUcgCGCaccuuCGCGCCg -3'
miRNA:   3'- gauuUGUGcGCGCAaaGCGg----GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 5405 0.69 0.849043
Target:  5'- ---uGCGcCGCGCGUUUCGagCgGCGCg -3'
miRNA:   3'- gauuUGU-GCGCGCAAAGCg-GgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 7023 0.72 0.669129
Target:  5'- ---cGCACGCGCGUcaCgGCCuCGuCGCCg -3'
miRNA:   3'- gauuUGUGCGCGCAaaG-CGG-GC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 7168 0.68 0.900114
Target:  5'- --cGugACGCGCGUg-CGCCacguuGUGCCc -3'
miRNA:   3'- gauUugUGCGCGCAaaGCGGg----CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7176 0.66 0.936693
Target:  5'- ----uCGCGCGCGUUgcagCGCauuucgaaccggcgCGUGCCg -3'
miRNA:   3'- gauuuGUGCGCGCAAa---GCGg-------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7292 0.67 0.918509
Target:  5'- --cAACACGuUGCGgucgcUUUGCCCGgGCa -3'
miRNA:   3'- gauUUGUGC-GCGCa----AAGCGGGCgCGg -5'
22953 3' -54.1 NC_005137.2 + 7345 0.66 0.939608
Target:  5'- --cGGCACGCGCcggUUCGaaaUGCGCUg -3'
miRNA:   3'- gauUUGUGCGCGca-AAGCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 10945 0.68 0.879573
Target:  5'- gCUAAGCACGaCGaCGaaggCGCCacgGUGCCa -3'
miRNA:   3'- -GAUUUGUGC-GC-GCaaa-GCGGg--CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13050 0.69 0.840888
Target:  5'- uUAuGCGCuCGUGUucggccaccuguUUCGCCCcGCGCCc -3'
miRNA:   3'- gAUuUGUGcGCGCA------------AAGCGGG-CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13056 0.68 0.879573
Target:  5'- -cGGACACGacacCGCGUUUgCGaaaCGCGCCc -3'
miRNA:   3'- gaUUUGUGC----GCGCAAA-GCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13233 0.69 0.840888
Target:  5'- aCUGGugGCaaguucggGCGCGUUUCGCaaaCGCGgUg -3'
miRNA:   3'- -GAUUugUG--------CGCGCAAAGCGg--GCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 19522 0.67 0.929021
Target:  5'- -gAAACgGCGCcaggcaaacgaagGCGUUcugUGCCCGcCGCCa -3'
miRNA:   3'- gaUUUG-UGCG-------------CGCAAa--GCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 20973 0.75 0.50547
Target:  5'- -----gGCGCGCGUUUUG-CCGCGCUu -3'
miRNA:   3'- gauuugUGCGCGCAAAGCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 24092 0.66 0.942434
Target:  5'- ---uGCGCuGCGCGUUUUGCaaaguggaaauaaUGCGCUg -3'
miRNA:   3'- gauuUGUG-CGCGCAAAGCGg------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 24194 0.69 0.824
Target:  5'- -aGAACGCGCGUcucgcuacauacGUUgacUgGCCCGUGUCa -3'
miRNA:   3'- gaUUUGUGCGCG------------CAA---AgCGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.