miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 88936 1.13 0.002286
Target:  5'- gCUAAACACGCGCGUUUCGCCCGCGCCa -3'
miRNA:   3'- -GAUUUGUGCGCGCAAAGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 63457 0.79 0.322467
Target:  5'- gUGAGgGCGCGCGUUgUGCCCGCGa- -3'
miRNA:   3'- gAUUUgUGCGCGCAAaGCGGGCGCgg -5'
22953 3' -54.1 NC_005137.2 + 97988 0.76 0.466866
Target:  5'- -cGGGCGCGCgGCGUgggugCGCCCGCcaagugGCCa -3'
miRNA:   3'- gaUUUGUGCG-CGCAaa---GCGGGCG------CGG- -5'
22953 3' -54.1 NC_005137.2 + 1838 0.75 0.495685
Target:  5'- aCUAAGauuGCGCGCGUUgcugaCCGCGCCg -3'
miRNA:   3'- -GAUUUg--UGCGCGCAAagcg-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 20973 0.75 0.50547
Target:  5'- -----gGCGCGCGUUUUG-CCGCGCUu -3'
miRNA:   3'- gauuugUGCGCGCAAAGCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 130850 0.75 0.545382
Target:  5'- -aGAACGCGUuggacGCGca--GCCCGCGCCu -3'
miRNA:   3'- gaUUUGUGCG-----CGCaaagCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 122635 0.74 0.565722
Target:  5'- ---uGCGCGUgauGCGguugaugUCGCCCGCGCUc -3'
miRNA:   3'- gauuUGUGCG---CGCaa-----AGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 110639 0.74 0.565722
Target:  5'- -cAAACGCGCcgacgGCGUUUgGCuuGUGCCc -3'
miRNA:   3'- gaUUUGUGCG-----CGCAAAgCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97936 0.74 0.585223
Target:  5'- -cAAAUACGCGCGgcauuguugcaauUUUCGuUCCGCGUCa -3'
miRNA:   3'- gaUUUGUGCGCGC-------------AAAGC-GGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 43968 0.74 0.596574
Target:  5'- -cGGGCGCGgGCGgc-UGCUCGUGCCg -3'
miRNA:   3'- gaUUUGUGCgCGCaaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 104685 0.73 0.617288
Target:  5'- cCUcGACGCGCGUGUUagaGUCCagcGCGCCg -3'
miRNA:   3'- -GAuUUGUGCGCGCAAag-CGGG---CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 100233 0.73 0.627666
Target:  5'- aUAAGCACGUGCG---CGCgCCGCGgCa -3'
miRNA:   3'- gAUUUGUGCGCGCaaaGCG-GGCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 31807 0.73 0.638047
Target:  5'- gCUAuGCACaGCGUGgucgCGUCCGCGCg -3'
miRNA:   3'- -GAUuUGUG-CGCGCaaa-GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 49846 0.73 0.658788
Target:  5'- -cAAGCG-GCGCGUaguuacCGCCgCGCGCCa -3'
miRNA:   3'- gaUUUGUgCGCGCAaa----GCGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 96181 0.73 0.658788
Target:  5'- -aAAGCACGC-UGU--UGCCCGCGUCg -3'
miRNA:   3'- gaUUUGUGCGcGCAaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 131095 0.72 0.669129
Target:  5'- -aAAGCGCGCGCGUcgUCGUaCC-UGCCg -3'
miRNA:   3'- gaUUUGUGCGCGCAa-AGCG-GGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7023 0.72 0.669129
Target:  5'- ---cGCACGCGCGUcaCgGCCuCGuCGCCg -3'
miRNA:   3'- gauuUGUGCGCGCAaaG-CGG-GC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 124012 0.72 0.689711
Target:  5'- aUAAAUGCGCgGCGUguaaGCCgCGCGCUc -3'
miRNA:   3'- gAUUUGUGCG-CGCAaag-CGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 26819 0.72 0.689711
Target:  5'- ---cGCACGUGCGUgcgUCGUcguguUCGCGCUg -3'
miRNA:   3'- gauuUGUGCGCGCAa--AGCG-----GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97467 0.72 0.699932
Target:  5'- gUAGugGCG-GCGUgaCGCUCGCGCa -3'
miRNA:   3'- gAUUugUGCgCGCAaaGCGGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.