miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 39810 0.69 0.832538
Target:  5'- --cAACACGCGUGcaaccaaaCG-CCGCGCCa -3'
miRNA:   3'- gauUUGUGCGCGCaaa-----GCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 60763 0.72 0.699932
Target:  5'- --cGACAuuuggcccgUGCGCGUUUCGCCUuuguGCGCg -3'
miRNA:   3'- gauUUGU---------GCGCGCAAAGCGGG----CGCGg -5'
22953 3' -54.1 NC_005137.2 + 44033 0.72 0.710095
Target:  5'- cCUuuGCGCGCaCgGUUUUGCCUGUGCUa -3'
miRNA:   3'- -GAuuUGUGCGcG-CAAAGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 43814 0.71 0.740136
Target:  5'- --cGGCACGaGCagc-CGCCCGCGCCc -3'
miRNA:   3'- gauUUGUGCgCGcaaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 55419 0.71 0.740136
Target:  5'- ----cCACGCGCacggcgcCGCCCGCGUCc -3'
miRNA:   3'- gauuuGUGCGCGcaaa---GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 2432 0.71 0.759695
Target:  5'- ----uCACGCG-GUggccgacgUGCCCGCGCCc -3'
miRNA:   3'- gauuuGUGCGCgCAaa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 42425 0.7 0.797343
Target:  5'- -gGGACACGUnaUGUgucCGCCgCGCGCa -3'
miRNA:   3'- gaUUUGUGCGc-GCAaa-GCGG-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 112700 0.7 0.797343
Target:  5'- uUAAACGCGgGCacgUCGUCCaCGCCc -3'
miRNA:   3'- gAUUUGUGCgCGcaaAGCGGGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 74909 0.7 0.815283
Target:  5'- -gAAACGUGCGCGUcacaaagggUUCGCaCCuCGCCa -3'
miRNA:   3'- gaUUUGUGCGCGCA---------AAGCG-GGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97467 0.72 0.699932
Target:  5'- gUAGugGCG-GCGUgaCGCUCGCGCa -3'
miRNA:   3'- gAUUugUGCgCGCAaaGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 59942 0.72 0.699932
Target:  5'- gCUGAGCugGCGCGccUCGUUgaUGCGCa -3'
miRNA:   3'- -GAUUUGugCGCGCaaAGCGG--GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 7023 0.72 0.669129
Target:  5'- ---cGCACGCGCGUcaCgGCCuCGuCGCCg -3'
miRNA:   3'- gauuUGUGCGCGCAaaG-CGG-GC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 97988 0.76 0.466866
Target:  5'- -cGGGCGCGCgGCGUgggugCGCCCGCcaagugGCCa -3'
miRNA:   3'- gaUUUGUGCG-CGCAaa---GCGGGCG------CGG- -5'
22953 3' -54.1 NC_005137.2 + 20973 0.75 0.50547
Target:  5'- -----gGCGCGCGUUUUG-CCGCGCUu -3'
miRNA:   3'- gauuugUGCGCGCAAAGCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 130850 0.75 0.545382
Target:  5'- -aGAACGCGUuggacGCGca--GCCCGCGCCu -3'
miRNA:   3'- gaUUUGUGCG-----CGCaaagCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 122635 0.74 0.565722
Target:  5'- ---uGCGCGUgauGCGguugaugUCGCCCGCGCUc -3'
miRNA:   3'- gauuUGUGCG---CGCaa-----AGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 110639 0.74 0.565722
Target:  5'- -cAAACGCGCcgacgGCGUUUgGCuuGUGCCc -3'
miRNA:   3'- gaUUUGUGCG-----CGCAAAgCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97936 0.74 0.585223
Target:  5'- -cAAAUACGCGCGgcauuguugcaauUUUCGuUCCGCGUCa -3'
miRNA:   3'- gaUUUGUGCGCGC-------------AAAGC-GGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 104685 0.73 0.617288
Target:  5'- cCUcGACGCGCGUGUUagaGUCCagcGCGCCg -3'
miRNA:   3'- -GAuUUGUGCGCGCAAag-CGGG---CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 96181 0.73 0.658788
Target:  5'- -aAAGCACGC-UGU--UGCCCGCGUCg -3'
miRNA:   3'- gaUUUGUGCGcGCAaaGCGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.