miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22956 3' -51.2 NC_005137.2 + 7169 0.66 0.988591
Target:  5'- cCGUGa-CGCGCGUGcgccacgUUGUGCccGGCGAc -3'
miRNA:   3'- -GCACgaGUGCGUACa------AACACG--CUGCU- -5'
22956 3' -51.2 NC_005137.2 + 116093 0.66 0.988591
Target:  5'- -cUGCUCuCGCAuUGUUuggUGUGCG-CGGa -3'
miRNA:   3'- gcACGAGuGCGU-ACAA---ACACGCuGCU- -5'
22956 3' -51.2 NC_005137.2 + 98362 0.66 0.987036
Target:  5'- --cGCUUguGCGCcgGUUUGgcgccgucGCGACGGg -3'
miRNA:   3'- gcaCGAG--UGCGuaCAAACa-------CGCUGCU- -5'
22956 3' -51.2 NC_005137.2 + 75123 0.67 0.968134
Target:  5'- uGUGCgaaAUGC-UGUUUG-GUGACGAc -3'
miRNA:   3'- gCACGag-UGCGuACAAACaCGCUGCU- -5'
22956 3' -51.2 NC_005137.2 + 6920 0.68 0.957151
Target:  5'- aCGUGUUCACGCAUucaacgcGgaaccUGUGCGaaGCGGu -3'
miRNA:   3'- -GCACGAGUGCGUA-------Caa---ACACGC--UGCU- -5'
22956 3' -51.2 NC_005137.2 + 13981 0.69 0.939998
Target:  5'- aGUGCUCGCGCAcGUucuUUG-GCGAg-- -3'
miRNA:   3'- gCACGAGUGCGUaCA---AACaCGCUgcu -5'
22956 3' -51.2 NC_005137.2 + 95524 0.69 0.924155
Target:  5'- gGUGgcgaCUUGCGC-UGcgUGUGCGACGAa -3'
miRNA:   3'- gCAC----GAGUGCGuACaaACACGCUGCU- -5'
22956 3' -51.2 NC_005137.2 + 68143 0.69 0.924155
Target:  5'- -uUGCUCGCGCGUGgccaa-CGACGAc -3'
miRNA:   3'- gcACGAGUGCGUACaaacacGCUGCU- -5'
22956 3' -51.2 NC_005137.2 + 55875 0.7 0.912298
Target:  5'- uGUGCUCACGUuUGUggccauuaUGUGgGACa- -3'
miRNA:   3'- gCACGAGUGCGuACAa-------ACACgCUGcu -5'
22956 3' -51.2 NC_005137.2 + 49980 0.7 0.892592
Target:  5'- -aUGCUCAUGUAUuuugacgcGUUUG-GCGGCGAc -3'
miRNA:   3'- gcACGAGUGCGUA--------CAAACaCGCUGCU- -5'
22956 3' -51.2 NC_005137.2 + 100171 0.71 0.885522
Target:  5'- gCGUGCUUGCGCAccgcUGgagUUG-GUGGCGGu -3'
miRNA:   3'- -GCACGAGUGCGU----ACa--AACaCGCUGCU- -5'
22956 3' -51.2 NC_005137.2 + 61350 0.73 0.773933
Target:  5'- aGUGUgg-UGCGUGUacaUUGUGCGGCGAg -3'
miRNA:   3'- gCACGaguGCGUACA---AACACGCUGCU- -5'
22956 3' -51.2 NC_005137.2 + 93633 1.1 0.006191
Target:  5'- aCGUGCUCACGCAUGUUUGUGCGACGAc -3'
miRNA:   3'- -GCACGAGUGCGUACAAACACGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.