miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22956 5' -57.7 NC_005137.2 + 123495 0.66 0.844598
Target:  5'- uCGUCGGgCGCGguug-GCGCAGCGu- -3'
miRNA:   3'- -GCGGCCgGCGCaucuaCGCGUUGUcc -5'
22956 5' -57.7 NC_005137.2 + 61516 0.66 0.836522
Target:  5'- uCGCCGGCCGCccauuugacGcAGA-GCGCGugcCAGa -3'
miRNA:   3'- -GCGGCCGGCG---------CaUCUaCGCGUu--GUCc -5'
22956 5' -57.7 NC_005137.2 + 30155 0.66 0.836522
Target:  5'- uCGUCGGCCuu----GUGCGCAACAGa -3'
miRNA:   3'- -GCGGCCGGcgcaucUACGCGUUGUCc -5'
22956 5' -57.7 NC_005137.2 + 59957 0.66 0.836522
Target:  5'- aGCUGGCuCGCG-AGAUuuacgcGCGCAACc-- -3'
miRNA:   3'- gCGGCCG-GCGCaUCUA------CGCGUUGucc -5'
22956 5' -57.7 NC_005137.2 + 57423 0.66 0.834063
Target:  5'- gCGCCGGCugcaaagccgucguCGCGUacgaaucgguGGAcgccGCGCAACgAGGc -3'
miRNA:   3'- -GCGGCCG--------------GCGCA----------UCUa---CGCGUUG-UCC- -5'
22956 5' -57.7 NC_005137.2 + 130116 0.66 0.828262
Target:  5'- aGUCGGaaacgcaCGCGUGGGUuGCGgCGauucuGCAGGa -3'
miRNA:   3'- gCGGCCg------GCGCAUCUA-CGC-GU-----UGUCC- -5'
22956 5' -57.7 NC_005137.2 + 95596 0.66 0.828262
Target:  5'- uGCCGcCCGCGcacuGUGCGCGACGu- -3'
miRNA:   3'- gCGGCcGGCGCauc-UACGCGUUGUcc -5'
22956 5' -57.7 NC_005137.2 + 97989 0.66 0.819827
Target:  5'- gGgCGcGCgGCGUGGGUGCGCccgccAAguGGc -3'
miRNA:   3'- gCgGC-CGgCGCAUCUACGCG-----UUguCC- -5'
22956 5' -57.7 NC_005137.2 + 3623 0.67 0.793548
Target:  5'- uGUCGGCCGCGcugAGGUuGCGUuuCAa- -3'
miRNA:   3'- gCGGCCGGCGCa--UCUA-CGCGuuGUcc -5'
22956 5' -57.7 NC_005137.2 + 59564 0.67 0.775298
Target:  5'- gCGCUGGCCGUGUucagccuGGUGUaCGACAa- -3'
miRNA:   3'- -GCGGCCGGCGCAu------CUACGcGUUGUcc -5'
22956 5' -57.7 NC_005137.2 + 26517 0.67 0.76598
Target:  5'- gCGCUGGCUGCGUuu-UGCGUGcCGGu -3'
miRNA:   3'- -GCGGCCGGCGCAucuACGCGUuGUCc -5'
22956 5' -57.7 NC_005137.2 + 109007 0.67 0.765042
Target:  5'- aCGCUGGUcaucgcgauaacgCGCGUGGGUugGCuaCAGCAGGa -3'
miRNA:   3'- -GCGGCCG-------------GCGCAUCUA--CGc-GUUGUCC- -5'
22956 5' -57.7 NC_005137.2 + 50089 0.68 0.717813
Target:  5'- gCGCCuccacGGCCGCGcaaAUGCGCGugAGc -3'
miRNA:   3'- -GCGG-----CCGGCGCaucUACGCGUugUCc -5'
22956 5' -57.7 NC_005137.2 + 96432 0.68 0.707928
Target:  5'- gCGCCcGCCGCGU---UGCGUuugcGCGGGu -3'
miRNA:   3'- -GCGGcCGGCGCAucuACGCGu---UGUCC- -5'
22956 5' -57.7 NC_005137.2 + 98749 0.68 0.687976
Target:  5'- uGCuuaCGGCgcuuUGCG-AGGUGCGCAACAGu -3'
miRNA:   3'- gCG---GCCG----GCGCaUCUACGCGUUGUCc -5'
22956 5' -57.7 NC_005137.2 + 10880 0.69 0.677928
Target:  5'- uGCUGGCCgacGCGUGcgcGAUGCGguGCAc- -3'
miRNA:   3'- gCGGCCGG---CGCAU---CUACGCguUGUcc -5'
22956 5' -57.7 NC_005137.2 + 122601 0.69 0.667842
Target:  5'- gCGCuCGGCCGacggaGUAGAccGCGCGcuGCAGc -3'
miRNA:   3'- -GCG-GCCGGCg----CAUCUa-CGCGU--UGUCc -5'
22956 5' -57.7 NC_005137.2 + 110597 0.69 0.637447
Target:  5'- gCGCCGGCCGCG---GUGUGCAc---- -3'
miRNA:   3'- -GCGGCCGGCGCaucUACGCGUugucc -5'
22956 5' -57.7 NC_005137.2 + 128548 0.7 0.627297
Target:  5'- uGCUGGCgGCGUuucAUGCuuGACAGGu -3'
miRNA:   3'- gCGGCCGgCGCAuc-UACGcgUUGUCC- -5'
22956 5' -57.7 NC_005137.2 + 116793 0.7 0.600942
Target:  5'- uGCCaacacuaacaaucauGGCUGCGUguuGGcagGCGCGGCAGGc -3'
miRNA:   3'- gCGG---------------CCGGCGCA---UCua-CGCGUUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.