Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22957 | 5' | -49.1 | NC_005137.2 | + | 1061 | 0.69 | 0.984306 |
Target: 5'- -aGCAGcAGCUUGAAgACaUUGaCCGCa -3' miRNA: 3'- ccCGUCuUUGAACUUgUGcAAC-GGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 5453 | 0.67 | 0.993915 |
Target: 5'- uGGGCGGAAACUcGAGCGaGUcuagCGCa -3' miRNA: 3'- -CCCGUCUUUGAaCUUGUgCAacg-GCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 7315 | 0.68 | 0.985602 |
Target: 5'- cGGGCAGGAugcggucaaaguGCUggcgccccgccaguUGAGuCAUGUUGCUGg -3' miRNA: 3'- -CCCGUCUU------------UGA--------------ACUU-GUGCAACGGCg -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 7679 | 0.66 | 0.9981 |
Target: 5'- aGGCAac-GCUuccaUGGGCACGUaaUGCCuGCg -3' miRNA: 3'- cCCGUcuuUGA----ACUUGUGCA--ACGG-CG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 12697 | 0.71 | 0.936366 |
Target: 5'- uGGGCGGAGgauugcACUUGA-CACucgaGCCGCc -3' miRNA: 3'- -CCCGUCUU------UGAACUuGUGcaa-CGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 18644 | 0.71 | 0.941379 |
Target: 5'- uGGGCuuAAACUUGAcgucgGCACa--GCCGCg -3' miRNA: 3'- -CCCGucUUUGAACU-----UGUGcaaCGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 18862 | 0.73 | 0.886749 |
Target: 5'- gGGGC-GAAACggUGAACACGcUGaaGCg -3' miRNA: 3'- -CCCGuCUUUGa-ACUUGUGCaACggCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 19987 | 0.69 | 0.977725 |
Target: 5'- cGGCGGAGGCUuugUGucGCGgCGUUGCUugGCg -3' miRNA: 3'- cCCGUCUUUGA---ACu-UGU-GCAACGG--CG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 21857 | 0.73 | 0.879384 |
Target: 5'- uGGGCA---ACUUGAGCACGUa--CGCg -3' miRNA: 3'- -CCCGUcuuUGAACUUGUGCAacgGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 24387 | 0.67 | 0.992948 |
Target: 5'- uGGGUuu--GCUguUGGACGCGgcgucagGCCGCc -3' miRNA: 3'- -CCCGucuuUGA--ACUUGUGCaa-----CGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 24631 | 0.67 | 0.992948 |
Target: 5'- cGGGaaaaAAACUUGAuCACG--GCCGCa -3' miRNA: 3'- -CCCguc-UUUGAACUuGUGCaaCGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 31229 | 0.73 | 0.900722 |
Target: 5'- cGGCAcaccAGCUUGAACAUG--GCCGCg -3' miRNA: 3'- cCCGUcu--UUGAACUUGUGCaaCGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 31902 | 0.7 | 0.96605 |
Target: 5'- uGGGacaCGGAuGCUUGAACGCGgcuauacGCaCGCg -3' miRNA: 3'- -CCC---GUCUuUGAACUUGUGCaa-----CG-GCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 37398 | 0.67 | 0.994773 |
Target: 5'- --aCGGAAugUUGAAUAUGggguagcGCCGCg -3' miRNA: 3'- cccGUCUUugAACUUGUGCaa-----CGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 38657 | 0.7 | 0.969304 |
Target: 5'- uGGGCAG--GC----GCGCGUUGCgGCa -3' miRNA: 3'- -CCCGUCuuUGaacuUGUGCAACGgCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 42410 | 0.66 | 0.996777 |
Target: 5'- cGGCGGugccccGCcgGGACACGUnauguguccGCCGCg -3' miRNA: 3'- cCCGUCuu----UGaaCUUGUGCAa--------CGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 48763 | 0.76 | 0.774004 |
Target: 5'- aGGCGGcgcGAUcgUUGGACGCGgcGCCGCa -3' miRNA: 3'- cCCGUCu--UUG--AACUUGUGCaaCGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 50632 | 0.74 | 0.855845 |
Target: 5'- cGGCAcGggGCUgcAGCACcUUGCCGCc -3' miRNA: 3'- cCCGU-CuuUGAacUUGUGcAACGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 52063 | 0.66 | 0.9981 |
Target: 5'- -cGCAuGAcGCga-AACGCGUUGUCGCa -3' miRNA: 3'- ccCGU-CUuUGaacUUGUGCAACGGCG- -5' |
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22957 | 5' | -49.1 | NC_005137.2 | + | 52602 | 0.68 | 0.986132 |
Target: 5'- cGGCGGAGgcGCUUGAAacggaaGCGc-GCCGUu -3' miRNA: 3'- cCCGUCUU--UGAACUUg-----UGCaaCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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