miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22957 5' -49.1 NC_005137.2 + 68776 0.67 0.99553
Target:  5'- uGGCGcGAAAaccgUGAAacUACGgUGCCGCg -3'
miRNA:   3'- cCCGU-CUUUga--ACUU--GUGCaACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 114797 0.69 0.982302
Target:  5'- uGGGCG---GCUUGcGCACGUcGUCGUc -3'
miRNA:   3'- -CCCGUcuuUGAACuUGUGCAaCGGCG- -5'
22957 5' -49.1 NC_005137.2 + 7315 0.68 0.985602
Target:  5'- cGGGCAGGAugcggucaaaguGCUggcgccccgccaguUGAGuCAUGUUGCUGg -3'
miRNA:   3'- -CCCGUCUU------------UGA--------------ACUU-GUGCAACGGCg -5'
22957 5' -49.1 NC_005137.2 + 76535 0.68 0.986132
Target:  5'- cGGCAGuuuGACgcuaaUUGAGCAUuUUGCCGg -3'
miRNA:   3'- cCCGUCu--UUG-----AACUUGUGcAACGGCg -5'
22957 5' -49.1 NC_005137.2 + 59759 0.68 0.987311
Target:  5'- aGGGCguagaaguguuuuuAGAGAUUUGcAACACGguggggUUGCgCGCg -3'
miRNA:   3'- -CCCG--------------UCUUUGAAC-UUGUGC------AACG-GCG- -5'
22957 5' -49.1 NC_005137.2 + 24387 0.67 0.992948
Target:  5'- uGGGUuu--GCUguUGGACGCGgcgucagGCCGCc -3'
miRNA:   3'- -CCCGucuuUGA--ACUUGUGCaa-----CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 119569 0.67 0.992948
Target:  5'- cGGUAGAgcGACgcacgcUGAGCACG-UGCCa- -3'
miRNA:   3'- cCCGUCU--UUGa-----ACUUGUGCaACGGcg -5'
22957 5' -49.1 NC_005137.2 + 85452 0.67 0.993915
Target:  5'- cGGCAcGA----UGAACACGguUUGCCGUu -3'
miRNA:   3'- cCCGU-CUuugaACUUGUGC--AACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 37398 0.67 0.994773
Target:  5'- --aCGGAAugUUGAAUAUGggguagcGCCGCg -3'
miRNA:   3'- cccGUCUUugAACUUGUGCaa-----CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 112462 0.69 0.977725
Target:  5'- cGGCAGGA---UGGGCgACGgcGCCGUg -3'
miRNA:   3'- cCCGUCUUugaACUUG-UGCaaCGGCG- -5'
22957 5' -49.1 NC_005137.2 + 108883 0.69 0.977223
Target:  5'- gGGGCAac-GCUUG-ACGCGguucuuacaagGCCGCa -3'
miRNA:   3'- -CCCGUcuuUGAACuUGUGCaa---------CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 38657 0.7 0.969304
Target:  5'- uGGGCAG--GC----GCGCGUUGCgGCa -3'
miRNA:   3'- -CCCGUCuuUGaacuUGUGCAACGgCG- -5'
22957 5' -49.1 NC_005137.2 + 48763 0.76 0.774004
Target:  5'- aGGCGGcgcGAUcgUUGGACGCGgcGCCGCa -3'
miRNA:   3'- cCCGUCu--UUG--AACUUGUGCaaCGGCG- -5'
22957 5' -49.1 NC_005137.2 + 50632 0.74 0.855845
Target:  5'- cGGCAcGggGCUgcAGCACcUUGCCGCc -3'
miRNA:   3'- cCCGU-CuuUGAacUUGUGcAACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 77759 0.74 0.855845
Target:  5'- cGGGUuGGAcGCUaUGAcguugcagaauuGCGCGUUGCCGCc -3'
miRNA:   3'- -CCCG-UCUuUGA-ACU------------UGUGCAACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 21857 0.73 0.879384
Target:  5'- uGGGCA---ACUUGAGCACGUa--CGCg -3'
miRNA:   3'- -CCCGUcuuUGAACUUGUGCAacgGCG- -5'
22957 5' -49.1 NC_005137.2 + 18862 0.73 0.886749
Target:  5'- gGGGC-GAAACggUGAACACGcUGaaGCg -3'
miRNA:   3'- -CCCGuCUUUGa-ACUUGUGCaACggCG- -5'
22957 5' -49.1 NC_005137.2 + 31229 0.73 0.900722
Target:  5'- cGGCAcaccAGCUUGAACAUG--GCCGCg -3'
miRNA:   3'- cCCGUcu--UUGAACUUGUGCaaCGGCG- -5'
22957 5' -49.1 NC_005137.2 + 69255 0.72 0.931089
Target:  5'- uGGGCuauGAAAC-UGGACGgCGUgcgcgGUCGCg -3'
miRNA:   3'- -CCCGu--CUUUGaACUUGU-GCAa----CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 61373 0.7 0.969304
Target:  5'- uGGGCGGccggcGAgUUGAugGCGUUGgCGg -3'
miRNA:   3'- -CCCGUCu----UUgAACUugUGCAACgGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.