miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22959 3' -48.3 NC_005137.2 + 34989 0.7 0.975383
Target:  5'- ----cGUUUgugGCGACgGGCAACGGCc -3'
miRNA:   3'- guacuCGAAaa-CGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 3582 0.69 0.986416
Target:  5'- aCGUaAGcCUUUUGC--CCGGCGAUGGCc -3'
miRNA:   3'- -GUAcUC-GAAAACGuuGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 35617 0.69 0.986416
Target:  5'- -uUGAGCgaUUGUAAaauaacgcCCGACucaAACGGCa -3'
miRNA:   3'- guACUCGaaAACGUU--------GGCUG---UUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 61348 0.69 0.984204
Target:  5'- uGUGGuGCguguacauugUGCGGCgaGACGACGGCa -3'
miRNA:   3'- gUACU-CGaaa-------ACGUUGg-CUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 81426 0.69 0.982584
Target:  5'- --cGAGCUUUgaUGCGcagcccagcACUGAUAACGuGCa -3'
miRNA:   3'- guaCUCGAAA--ACGU---------UGGCUGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 71510 0.7 0.97799
Target:  5'- ---cAGUcaacGCGGCCGACGACGGUa -3'
miRNA:   3'- guacUCGaaaaCGUUGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 122539 0.72 0.946029
Target:  5'- --aGGGCgcuaagGCGGCgGGCGugGGCg -3'
miRNA:   3'- guaCUCGaaaa--CGUUGgCUGUugCCG- -5'
22959 3' -48.3 NC_005137.2 + 79876 0.72 0.930741
Target:  5'- ----cGCaaUUUGCGGCgGGCAGCGGCa -3'
miRNA:   3'- guacuCGa-AAACGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 59043 0.73 0.912995
Target:  5'- uGUGAGCguugUGCAAacguUUGugGACGGCu -3'
miRNA:   3'- gUACUCGaaa-ACGUU----GGCugUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 121196 0.68 0.990909
Target:  5'- gAUGGGCUcUUUGCGAUCaacauUAugGGCa -3'
miRNA:   3'- gUACUCGA-AAACGUUGGcu---GUugCCG- -5'
22959 3' -48.3 NC_005137.2 + 47406 0.68 0.991998
Target:  5'- gGUGAucaguuuGCgUUUGUacGACCG-CAGCGGCg -3'
miRNA:   3'- gUACU-------CGaAAACG--UUGGCuGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 37831 0.68 0.992981
Target:  5'- -cUGAGCgcuagcaucgUGCuGACCGGCGACGcGUu -3'
miRNA:   3'- guACUCGaaa-------ACG-UUGGCUGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 100890 0.79 0.605733
Target:  5'- gGUGGGUUaUUUGCuugggagaucgacGCCGACAACGGCg -3'
miRNA:   3'- gUACUCGA-AAACGu------------UGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 34085 0.66 0.998692
Target:  5'- aCGUGcGCgcgaaugccgGCAAacCCGACAACGuGCg -3'
miRNA:   3'- -GUACuCGaaaa------CGUU--GGCUGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 50436 0.66 0.998529
Target:  5'- gGUGGGCc---GCGaaaaACUGACcGCGGCu -3'
miRNA:   3'- gUACUCGaaaaCGU----UGGCUGuUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 63454 0.66 0.998529
Target:  5'- --aGGGCgcgcgUUGUGcCCGcgaGCGACGGCg -3'
miRNA:   3'- guaCUCGaa---AACGUuGGC---UGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 63801 0.67 0.997477
Target:  5'- --cGGGCgcgacgcgaugcGCGACCGucgccGCGGCGGCg -3'
miRNA:   3'- guaCUCGaaaa--------CGUUGGC-----UGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 36108 0.67 0.995724
Target:  5'- --cGAcGUUuaaUUUGUAACaGGCAACGGCa -3'
miRNA:   3'- guaCU-CGA---AAACGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 19610 0.68 0.993186
Target:  5'- --cGAGCUUUUGCGugUGGucaAACaGCa -3'
miRNA:   3'- guaCUCGAAAACGUugGCUg--UUGcCG- -5'
22959 3' -48.3 NC_005137.2 + 128780 0.68 0.993186
Target:  5'- cCGUGGGCg--UGCuAACCuACAaacuauuaaccgGCGGCa -3'
miRNA:   3'- -GUACUCGaaaACG-UUGGcUGU------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.