miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22959 3' -48.3 NC_005137.2 + 49841 0.66 0.998743
Target:  5'- aCAUGAGCauguugUUUUGCAAacuguuuaaacauCCGuGCAggucuugGCGGCg -3'
miRNA:   3'- -GUACUCG------AAAACGUU-------------GGC-UGU-------UGCCG- -5'
22959 3' -48.3 NC_005137.2 + 79574 0.67 0.994983
Target:  5'- aAUGAGCUUgcGCGccGCCGuGCGAUaGCg -3'
miRNA:   3'- gUACUCGAAaaCGU--UGGC-UGUUGcCG- -5'
22959 3' -48.3 NC_005137.2 + 97658 0.67 0.994983
Target:  5'- gAUGGGCacuuugUUUUGCAcCaaauaGGCAAUGGCu -3'
miRNA:   3'- gUACUCG------AAAACGUuGg----CUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 78756 0.67 0.997431
Target:  5'- --cGGGCgccgUUUGUAACCagaGCuucuGCGGCg -3'
miRNA:   3'- guaCUCGa---AAACGUUGGc--UGu---UGCCG- -5'
22959 3' -48.3 NC_005137.2 + 30785 0.66 0.998218
Target:  5'- --aGAGUUUUUGUcgUCGuCGACGcGCa -3'
miRNA:   3'- guaCUCGAAAACGuuGGCuGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 75284 0.66 0.998218
Target:  5'- ---cGGCUguaaCGGCgGGCAACGGCg -3'
miRNA:   3'- guacUCGAaaacGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 80228 0.66 0.998218
Target:  5'- gGUGAacgGCUgcgcggUUGCGuUUGAUGACGGCg -3'
miRNA:   3'- gUACU---CGAa-----AACGUuGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 63008 0.66 0.998529
Target:  5'- cCAUGGuGCg---GC-GCCGGCGuguCGGCa -3'
miRNA:   3'- -GUACU-CGaaaaCGuUGGCUGUu--GCCG- -5'
22959 3' -48.3 NC_005137.2 + 96293 0.66 0.998529
Target:  5'- --gGAcGCg--UGCAuucGCCGACAcgcCGGCg -3'
miRNA:   3'- guaCU-CGaaaACGU---UGGCUGUu--GCCG- -5'
22959 3' -48.3 NC_005137.2 + 33789 0.68 0.99414
Target:  5'- -uUGuGCUgugccaacgUUGCAACUcggagcuuaauGGCGGCGGCa -3'
miRNA:   3'- guACuCGAa--------AACGUUGG-----------CUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 87086 0.68 0.992112
Target:  5'- gCAUGAacGCcg-UGCAcgcgGCCGuuaACAACGGCc -3'
miRNA:   3'- -GUACU--CGaaaACGU----UGGC---UGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 48739 0.69 0.986416
Target:  5'- cCAUGccGCUcUUGUcGCCGAacaaGGCGGCg -3'
miRNA:   3'- -GUACu-CGAaAACGuUGGCUg---UUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 110407 0.75 0.845551
Target:  5'- aCGUGGuGUUUccGCAGCUGGCAACGGg -3'
miRNA:   3'- -GUACU-CGAAaaCGUUGGCUGUUGCCg -5'
22959 3' -48.3 NC_005137.2 + 130536 0.73 0.899807
Target:  5'- ----cGCUgg-GCAGCCGccGCGGCGGCa -3'
miRNA:   3'- guacuCGAaaaCGUUGGC--UGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 74115 0.73 0.912995
Target:  5'- aCGUGuuGGCUUUcGC-GCCGGC-ACGGCa -3'
miRNA:   3'- -GUAC--UCGAAAaCGuUGGCUGuUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 110441 0.73 0.919184
Target:  5'- gGUGAGCg--UGCAcACCG-CGGcCGGCg -3'
miRNA:   3'- gUACUCGaaaACGU-UGGCuGUU-GCCG- -5'
22959 3' -48.3 NC_005137.2 + 32892 0.72 0.925099
Target:  5'- --cGAcGCg---GUAGCCGGCGGCGGUg -3'
miRNA:   3'- guaCU-CGaaaaCGUUGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 116882 0.71 0.950586
Target:  5'- uGUGcGCUgccccGCGACuUGACAACGGCc -3'
miRNA:   3'- gUACuCGAaaa--CGUUG-GCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 74265 0.71 0.962689
Target:  5'- ----cGCgugUUUGCAACUGACAA-GGCg -3'
miRNA:   3'- guacuCGa--AAACGUUGGCUGUUgCCG- -5'
22959 3' -48.3 NC_005137.2 + 34989 0.7 0.975383
Target:  5'- ----cGUUUgugGCGACgGGCAACGGCc -3'
miRNA:   3'- guacuCGAAaa-CGUUGgCUGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.