miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22959 3' -48.3 NC_005137.2 + 3582 0.69 0.986416
Target:  5'- aCGUaAGcCUUUUGC--CCGGCGAUGGCc -3'
miRNA:   3'- -GUAcUC-GAAAACGuuGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 19420 0.76 0.780528
Target:  5'- --aGAGCacg-GCAACaCGGCAACGGUg -3'
miRNA:   3'- guaCUCGaaaaCGUUG-GCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 19610 0.68 0.993186
Target:  5'- --cGAGCUUUUGCGugUGGucaAACaGCa -3'
miRNA:   3'- guaCUCGAAAACGUugGCUg--UUGcCG- -5'
22959 3' -48.3 NC_005137.2 + 22618 0.79 0.610104
Target:  5'- gCGUGAGCgcggUGCAGCCGACGGa-GCg -3'
miRNA:   3'- -GUACUCGaaa-ACGUUGGCUGUUgcCG- -5'
22959 3' -48.3 NC_005137.2 + 30785 0.66 0.998218
Target:  5'- --aGAGUUUUUGUcgUCGuCGACGcGCa -3'
miRNA:   3'- guaCUCGAAAACGuuGGCuGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 32892 0.72 0.925099
Target:  5'- --cGAcGCg---GUAGCCGGCGGCGGUg -3'
miRNA:   3'- guaCU-CGaaaaCGUUGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 33789 0.68 0.99414
Target:  5'- -uUGuGCUgugccaacgUUGCAACUcggagcuuaauGGCGGCGGCa -3'
miRNA:   3'- guACuCGAa--------AACGUUGG-----------CUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 34085 0.66 0.998692
Target:  5'- aCGUGcGCgcgaaugccgGCAAacCCGACAACGuGCg -3'
miRNA:   3'- -GUACuCGaaaa------CGUU--GGCUGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 34989 0.7 0.975383
Target:  5'- ----cGUUUgugGCGACgGGCAACGGCc -3'
miRNA:   3'- guacuCGAAaa-CGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 35617 0.69 0.986416
Target:  5'- -uUGAGCgaUUGUAAaauaacgcCCGACucaAACGGCa -3'
miRNA:   3'- guACUCGaaAACGUU--------GGCUG---UUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 36108 0.67 0.995724
Target:  5'- --cGAcGUUuaaUUUGUAACaGGCAACGGCa -3'
miRNA:   3'- guaCU-CGA---AAACGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 37831 0.68 0.992981
Target:  5'- -cUGAGCgcuagcaucgUGCuGACCGGCGACGcGUu -3'
miRNA:   3'- guACUCGaaa-------ACG-UUGGCUGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 47406 0.68 0.991998
Target:  5'- gGUGAucaguuuGCgUUUGUacGACCG-CAGCGGCg -3'
miRNA:   3'- gUACU-------CGaAAACG--UUGGCuGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 48739 0.69 0.986416
Target:  5'- cCAUGccGCUcUUGUcGCCGAacaaGGCGGCg -3'
miRNA:   3'- -GUACu-CGAaAACGuUGGCUg---UUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 49841 0.66 0.998743
Target:  5'- aCAUGAGCauguugUUUUGCAAacuguuuaaacauCCGuGCAggucuugGCGGCg -3'
miRNA:   3'- -GUACUCG------AAAACGUU-------------GGC-UGU-------UGCCG- -5'
22959 3' -48.3 NC_005137.2 + 50436 0.66 0.998529
Target:  5'- gGUGGGCc---GCGaaaaACUGACcGCGGCu -3'
miRNA:   3'- gUACUCGaaaaCGU----UGGCUGuUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 59043 0.73 0.912995
Target:  5'- uGUGAGCguugUGCAAacguUUGugGACGGCu -3'
miRNA:   3'- gUACUCGaaa-ACGUU----GGCugUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 60652 0.75 0.834202
Target:  5'- -uUGAGCacgUGUuugauuuggccaccGACCGACAGCGGUg -3'
miRNA:   3'- guACUCGaaaACG--------------UUGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 61348 0.69 0.984204
Target:  5'- uGUGGuGCguguacauugUGCGGCgaGACGACGGCa -3'
miRNA:   3'- gUACU-CGaaa-------ACGUUGg-CUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 63008 0.66 0.998529
Target:  5'- cCAUGGuGCg---GC-GCCGGCGuguCGGCa -3'
miRNA:   3'- -GUACU-CGaaaaCGuUGGCUGUu--GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.