Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 106686 | 0.66 | 0.976449 |
Target: 5'- -cGACAACG-GCCGUGccCGCCAc-- -3' miRNA: 3'- ccUUGUUGCgCGGCACauGCGGUuca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 31242 | 0.66 | 0.973825 |
Target: 5'- uGAACAuggcCGCGUCGUGcGCGCuCAAc- -3' miRNA: 3'- cCUUGUu---GCGCGGCACaUGCG-GUUca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 50821 | 0.66 | 0.970995 |
Target: 5'- cGGuaGACGGguuUGUGCgCGUGUuggucaGCGCCAGGUg -3' miRNA: 3'- -CC--UUGUU---GCGCG-GCACA------UGCGGUUCA- -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 130859 | 0.66 | 0.970995 |
Target: 5'- uGGAcgcGCAGCccGCGCCugaauUGUACGCCGc-- -3' miRNA: 3'- -CCU---UGUUG--CGCGGc----ACAUGCGGUuca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 41965 | 0.66 | 0.967951 |
Target: 5'- --cGCGugGCGCGCCGUGacaGCGUCAGa- -3' miRNA: 3'- ccuUGU--UGCGCGGCACa--UGCGGUUca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 116031 | 0.66 | 0.967951 |
Target: 5'- uGggUGACGCGUuuaaGUGuUGCGCCAAa- -3' miRNA: 3'- cCuuGUUGCGCGg---CAC-AUGCGGUUca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 99955 | 0.66 | 0.964688 |
Target: 5'- uGGACAacggccgcggccGCGCGCCucuucGUGCGCCAGc- -3' miRNA: 3'- cCUUGU------------UGCGCGGca---CAUGCGGUUca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 56492 | 0.66 | 0.964688 |
Target: 5'- --uGCAACGCGUCGUGU-CGCg---- -3' miRNA: 3'- ccuUGUUGCGCGGCACAuGCGguuca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 63435 | 0.66 | 0.961199 |
Target: 5'- cGAGCGACgGCGagaCCGUGUuggaguuugGCGCCGAa- -3' miRNA: 3'- cCUUGUUG-CGC---GGCACA---------UGCGGUUca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 31345 | 0.66 | 0.961199 |
Target: 5'- aGGGCGACGCggGCCGguUGCGCCGu-- -3' miRNA: 3'- cCUUGUUGCG--CGGCacAUGCGGUuca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 104701 | 0.67 | 0.957478 |
Target: 5'- aGAGucCAGCGCGCCGccguUGUACGCg---- -3' miRNA: 3'- cCUU--GUUGCGCGGC----ACAUGCGguuca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 28050 | 0.67 | 0.957478 |
Target: 5'- uGGcGCGacGCGCGCUGggaUGCGCCAGa- -3' miRNA: 3'- -CCuUGU--UGCGCGGCac-AUGCGGUUca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 128696 | 0.67 | 0.95352 |
Target: 5'- cGGGGCuaaaauauuccAACGUGCCGUcGUgcACGCCcuuaGAGUg -3' miRNA: 3'- -CCUUG-----------UUGCGCGGCA-CA--UGCGG----UUCA- -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 55575 | 0.67 | 0.949321 |
Target: 5'- cGGACGcggGCgGCGCCGUGcGCGUgGAGc -3' miRNA: 3'- cCUUGU---UG-CGCGGCACaUGCGgUUCa -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 115307 | 0.67 | 0.949321 |
Target: 5'- cGGGCGAuUGCGCCGcgGUugaACGCUGAGg -3' miRNA: 3'- cCUUGUU-GCGCGGCa-CA---UGCGGUUCa -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 110729 | 0.67 | 0.944878 |
Target: 5'- aGGAugGGCGCGCCaag-ACG-CAGGUg -3' miRNA: 3'- -CCUugUUGCGCGGcacaUGCgGUUCA- -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 14593 | 0.67 | 0.944878 |
Target: 5'- aGAGuCGGCGUuaaaGUCGguaggugGUGCGCCAAGUa -3' miRNA: 3'- cCUU-GUUGCG----CGGCa------CAUGCGGUUCA- -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 112470 | 0.68 | 0.935245 |
Target: 5'- uGGGCGACgGCGCCGUGUaaucaaaaucGCGCaacucGGUa -3' miRNA: 3'- cCUUGUUG-CGCGGCACA----------UGCGgu---UCA- -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 7141 | 0.68 | 0.935245 |
Target: 5'- cGGcGACcGCuCGuCCGUGUGCGCCAGc- -3' miRNA: 3'- -CC-UUGuUGcGC-GGCACAUGCGGUUca -5' |
|||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 65645 | 0.68 | 0.930052 |
Target: 5'- aGAGuCAACGCccucacaCGUGUACGCCAAc- -3' miRNA: 3'- cCUU-GUUGCGcg-----GCACAUGCGGUUca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home