miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22961 5' -55.5 NC_005137.2 + 37592 0.66 0.895812
Target:  5'- ---cGUGGUGCGCGgcgGCaaucaCGCUGAUc -3'
miRNA:   3'- ucaaCACCAUGCGCaa-CGc----GCGGCUA- -5'
22961 5' -55.5 NC_005137.2 + 99349 0.66 0.881942
Target:  5'- ---cGUGGUACGCGUcggaacaaUGCacgGCGCCc-- -3'
miRNA:   3'- ucaaCACCAUGCGCA--------ACG---CGCGGcua -5'
22961 5' -55.5 NC_005137.2 + 20541 0.66 0.866383
Target:  5'- uGGUUGUGGUGCGaGUUucacaaagcgcacGCGUaCCGAg -3'
miRNA:   3'- -UCAACACCAUGCgCAA-------------CGCGcGGCUa -5'
22961 5' -55.5 NC_005137.2 + 18233 0.67 0.859415
Target:  5'- uGUUGcUGuGUGCGCGUcguucguacUGCGgCGCCGc- -3'
miRNA:   3'- uCAAC-AC-CAUGCGCA---------ACGC-GCGGCua -5'
22961 5' -55.5 NC_005137.2 + 119419 0.67 0.817685
Target:  5'- cGUUGUGGUGCGCacgGCaGCGuuGc- -3'
miRNA:   3'- uCAACACCAUGCGcaaCG-CGCggCua -5'
22961 5' -55.5 NC_005137.2 + 75961 0.69 0.752151
Target:  5'- cGUUGUcGUgACGCGgcGCGCGuuGGUg -3'
miRNA:   3'- uCAACAcCA-UGCGCaaCGCGCggCUA- -5'
22961 5' -55.5 NC_005137.2 + 94285 0.69 0.73229
Target:  5'- --gUGUGGcGCGCGaguuuaauuguUUGCGCGCCa-- -3'
miRNA:   3'- ucaACACCaUGCGC-----------AACGCGCGGcua -5'
22961 5' -55.5 NC_005137.2 + 43741 0.73 0.515917
Target:  5'- ---cGUGGUAgCGCGUaagcUGCGCGCCa-- -3'
miRNA:   3'- ucaaCACCAU-GCGCA----ACGCGCGGcua -5'
22961 5' -55.5 NC_005137.2 + 61349 0.73 0.515917
Target:  5'- --gUGUGGUGCGUGUacauUGUGCGgCGAg -3'
miRNA:   3'- ucaACACCAUGCGCA----ACGCGCgGCUa -5'
22961 5' -55.5 NC_005137.2 + 45270 0.73 0.496114
Target:  5'- aAGUUGUGcG-ACGCGUcGCGCGCCc-- -3'
miRNA:   3'- -UCAACAC-CaUGCGCAaCGCGCGGcua -5'
22961 5' -55.5 NC_005137.2 + 108101 1.05 0.004342
Target:  5'- gAGUUGUGGUACGCGUUGCGCGCCGAUc -3'
miRNA:   3'- -UCAACACCAUGCGCAACGCGCGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.