miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22966 5' -55.8 NC_005137.2 + 9265 0.75 0.383623
Target:  5'- uGAGACGGCUuguuGCGCGCGCGCa----- -3'
miRNA:   3'- -UUCUGCCGGu---CGUGCGUGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 72285 0.67 0.818582
Target:  5'- uGGACGGUuuGCACGUgugccuaauugACGCCAAc-- -3'
miRNA:   3'- uUCUGCCGguCGUGCG-----------UGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 96687 0.67 0.817694
Target:  5'- cGGACGGCCguacacaaaaAGCggguucggcguugACGCAcCGCCAAAa- -3'
miRNA:   3'- uUCUGCCGG----------UCG-------------UGCGU-GCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 39803 0.67 0.794934
Target:  5'- -uGGCGGCCAaCACGCgugcaaccaaacgccGCGCCAc--- -3'
miRNA:   3'- uuCUGCCGGUcGUGCG---------------UGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 1681 0.67 0.781753
Target:  5'- --cGCGGUCAGCaACGCGCGCa----- -3'
miRNA:   3'- uucUGCCGGUCG-UGCGUGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 69268 0.68 0.762447
Target:  5'- uGGACGGCguGCGCGguCGCg----- -3'
miRNA:   3'- uUCUGCCGguCGUGCguGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 73799 0.68 0.74265
Target:  5'- --cACGGCCugcuGCAgGUugGCCAAAa- -3'
miRNA:   3'- uucUGCCGGu---CGUgCGugCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 125050 0.68 0.732593
Target:  5'- gGAGcCGGgCGGCGCG-GCGCCGGAUc -3'
miRNA:   3'- -UUCuGCCgGUCGUGCgUGCGGUUUAc -5'
22966 5' -55.8 NC_005137.2 + 114797 0.68 0.732593
Target:  5'- uGGGCGGCUugcGCACGUcgucguCGUCAGAUGu -3'
miRNA:   3'- uUCUGCCGGu--CGUGCGu-----GCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 50824 0.69 0.712212
Target:  5'- uAGACGGgUuuguGCGCGUguuggucaGCGCCAGGUGa -3'
miRNA:   3'- uUCUGCCgGu---CGUGCG--------UGCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 28075 0.69 0.670661
Target:  5'- cAGACGGCuguacacgCAGCGCgGCcUGCCGGGUGa -3'
miRNA:   3'- uUCUGCCG--------GUCGUG-CGuGCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 42173 0.7 0.639114
Target:  5'- gGAGuuGGCCAGCGuCGCGucCGCCGAc-- -3'
miRNA:   3'- -UUCugCCGGUCGU-GCGU--GCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 110456 0.7 0.622252
Target:  5'- --cGCGGCCGGCGCGUAcacggggucacuaacCGCCAGcUGu -3'
miRNA:   3'- uucUGCCGGUCGUGCGU---------------GCGGUUuAC- -5'
22966 5' -55.8 NC_005137.2 + 98014 0.71 0.58653
Target:  5'- cAAG-UGGCCAGCGUGCACGUCGGGc- -3'
miRNA:   3'- -UUCuGCCGGUCGUGCGUGCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 47558 0.71 0.58653
Target:  5'- -uGAUGGCUGGCGCGUACuuGCCAGu-- -3'
miRNA:   3'- uuCUGCCGGUCGUGCGUG--CGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 45453 0.71 0.565686
Target:  5'- cGGGCGGCgCAGCacGCGCACGCg----- -3'
miRNA:   3'- uUCUGCCG-GUCG--UGCGUGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 110626 0.72 0.494616
Target:  5'- -uGACGGCCGuGCACaaaCGCGCCGAcgGc -3'
miRNA:   3'- uuCUGCCGGU-CGUGc--GUGCGGUUuaC- -5'
22966 5' -55.8 NC_005137.2 + 67546 0.73 0.455858
Target:  5'- cGAGGCGGCacaaACGCGCGCCGAGc- -3'
miRNA:   3'- -UUCUGCCGgucgUGCGUGCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 31626 0.73 0.455858
Target:  5'- -uGGCGGCCAacggucaguGCACGCGCGCgGAc-- -3'
miRNA:   3'- uuCUGCCGGU---------CGUGCGUGCGgUUuac -5'
22966 5' -55.8 NC_005137.2 + 116290 1.06 0.0034
Target:  5'- gAAGACGGCCAGCACGCACGCCAAAUGu -3'
miRNA:   3'- -UUCUGCCGGUCGUGCGUGCGGUUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.