miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22966 5' -55.8 NC_005137.2 + 1681 0.67 0.781753
Target:  5'- --cGCGGUCAGCaACGCGCGCa----- -3'
miRNA:   3'- uucUGCCGGUCG-UGCGUGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 7177 0.67 0.827363
Target:  5'- -cGACgaGGCCGugacGCGCGUGCGCCAc--- -3'
miRNA:   3'- uuCUG--CCGGU----CGUGCGUGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 9265 0.75 0.383623
Target:  5'- uGAGACGGCUuguuGCGCGCGCGCa----- -3'
miRNA:   3'- -UUCUGCCGGu---CGUGCGUGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 11133 0.66 0.844351
Target:  5'- -cGGCGGUUAGCGCcgAUGCCGAAUu -3'
miRNA:   3'- uuCUGCCGGUCGUGcgUGCGGUUUAc -5'
22966 5' -55.8 NC_005137.2 + 11308 0.67 0.809622
Target:  5'- cGGGCGuGgUGGCACGCGCaGCCAAc-- -3'
miRNA:   3'- uUCUGC-CgGUCGUGCGUG-CGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 25741 0.66 0.835955
Target:  5'- --uACGGCCAGgACGUuuGCCGAu-- -3'
miRNA:   3'- uucUGCCGGUCgUGCGugCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 28075 0.69 0.670661
Target:  5'- cAGACGGCuguacacgCAGCGCgGCcUGCCGGGUGa -3'
miRNA:   3'- uUCUGCCG--------GUCGUG-CGuGCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 28886 0.66 0.835955
Target:  5'- --cAUGGCUAcuaaacGCGCGCACGCUAgcAAUGa -3'
miRNA:   3'- uucUGCCGGU------CGUGCGUGCGGU--UUAC- -5'
22966 5' -55.8 NC_005137.2 + 31626 0.73 0.455858
Target:  5'- -uGGCGGCCAacggucaguGCACGCGCGCgGAc-- -3'
miRNA:   3'- uuCUGCCGGU---------CGUGCGUGCGgUUuac -5'
22966 5' -55.8 NC_005137.2 + 39803 0.67 0.794934
Target:  5'- -uGGCGGCCAaCACGCgugcaaccaaacgccGCGCCAc--- -3'
miRNA:   3'- uuCUGCCGGUcGUGCG---------------UGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 41613 0.7 0.649648
Target:  5'- --uGCGGaCAGCGCGUGCGCCAu--- -3'
miRNA:   3'- uucUGCCgGUCGUGCGUGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 42173 0.7 0.639114
Target:  5'- gGAGuuGGCCAGCGuCGCGucCGCCGAc-- -3'
miRNA:   3'- -UUCugCCGGUCGU-GCGU--GCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 42201 0.67 0.827363
Target:  5'- aGGGACGGCgAcGCGCGCuACaaCGAGUGg -3'
miRNA:   3'- -UUCUGCCGgU-CGUGCG-UGcgGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 45453 0.71 0.565686
Target:  5'- cGGGCGGCgCAGCacGCGCACGCg----- -3'
miRNA:   3'- uUCUGCCG-GUCG--UGCGUGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 47558 0.71 0.58653
Target:  5'- -uGAUGGCUGGCGCGUACuuGCCAGu-- -3'
miRNA:   3'- uuCUGCCGGUCGUGCGUG--CGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 49380 0.7 0.639114
Target:  5'- gAGGACGGCCcGCcCGaa-GCCAAGUGc -3'
miRNA:   3'- -UUCUGCCGGuCGuGCgugCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 50824 0.69 0.712212
Target:  5'- uAGACGGgUuuguGCGCGUguuggucaGCGCCAGGUGa -3'
miRNA:   3'- uUCUGCCgGu---CGUGCG--------UGCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 59423 0.66 0.860523
Target:  5'- --cACGGCCAGCGCGCccaGUaaCAAGUa -3'
miRNA:   3'- uucUGCCGGUCGUGCGug-CG--GUUUAc -5'
22966 5' -55.8 NC_005137.2 + 61373 0.66 0.835955
Target:  5'- uGGGCGGCCGGCgaguugaugGCGUugGCg----- -3'
miRNA:   3'- uUCUGCCGGUCG---------UGCGugCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 63923 0.66 0.868284
Target:  5'- cGGACGGUUcGCACGCgguGCG-CGAAUGu -3'
miRNA:   3'- uUCUGCCGGuCGUGCG---UGCgGUUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.