miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22966 5' -55.8 NC_005137.2 + 130609 0.67 0.818582
Target:  5'- -uGACGaaaGCgCGGaCACGCGCGCCGAc-- -3'
miRNA:   3'- uuCUGC---CG-GUC-GUGCGUGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 127623 0.68 0.772166
Target:  5'- uGAG-UGGCCGGCACGU-UGCCAGc-- -3'
miRNA:   3'- -UUCuGCCGGUCGUGCGuGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 125050 0.68 0.732593
Target:  5'- gGAGcCGGgCGGCGCG-GCGCCGGAUc -3'
miRNA:   3'- -UUCuGCCgGUCGUGCgUGCGGUUUAc -5'
22966 5' -55.8 NC_005137.2 + 118649 0.66 0.852543
Target:  5'- uGGACGGUCGgucuacggcGCACaugaGCACGCCAu--- -3'
miRNA:   3'- uUCUGCCGGU---------CGUG----CGUGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 116290 1.06 0.0034
Target:  5'- gAAGACGGCCAGCACGCACGCCAAAUGu -3'
miRNA:   3'- -UUCUGCCGGUCGUGCGUGCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 114797 0.68 0.732593
Target:  5'- uGGGCGGCUugcGCACGUcgucguCGUCAGAUGu -3'
miRNA:   3'- uUCUGCCGGu--CGUGCGu-----GCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 113106 0.66 0.852543
Target:  5'- uAGAauaugUGGCaAGCGCGUGCGCCAAc-- -3'
miRNA:   3'- uUCU-----GCCGgUCGUGCGUGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 110626 0.72 0.494616
Target:  5'- -uGACGGCCGuGCACaaaCGCGCCGAcgGc -3'
miRNA:   3'- uuCUGCCGGU-CGUGc--GUGCGGUUuaC- -5'
22966 5' -55.8 NC_005137.2 + 110456 0.7 0.622252
Target:  5'- --cGCGGCCGGCGCGUAcacggggucacuaacCGCCAGcUGu -3'
miRNA:   3'- uucUGCCGGUCGUGCGU---------------GCGGUUuAC- -5'
22966 5' -55.8 NC_005137.2 + 108150 0.66 0.852543
Target:  5'- cGGGCGGCggCGGCgucgguauGCGCGCGCCc---- -3'
miRNA:   3'- uUCUGCCG--GUCG--------UGCGUGCGGuuuac -5'
22966 5' -55.8 NC_005137.2 + 104225 0.74 0.418796
Target:  5'- cGAGcCGGCCAGCACGacgaagGCGCCAc--- -3'
miRNA:   3'- -UUCuGCCGGUCGUGCg-----UGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 103677 0.66 0.860523
Target:  5'- uGAGAUGGCCaAGgGCGaacuuaACGCCAc--- -3'
miRNA:   3'- -UUCUGCCGG-UCgUGCg-----UGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 103060 0.67 0.80049
Target:  5'- -uGACGGCCu---CGUACGCCGuGUGc -3'
miRNA:   3'- uuCUGCCGGucguGCGUGCGGUuUAC- -5'
22966 5' -55.8 NC_005137.2 + 99966 0.66 0.835955
Target:  5'- --cGCGGCC-GCGCGCcucuucguGCGCCAGc-- -3'
miRNA:   3'- uucUGCCGGuCGUGCG--------UGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 99332 0.66 0.835955
Target:  5'- aAGGAUGGCaaaCAGCGCGUgguacGCGUCGGAa- -3'
miRNA:   3'- -UUCUGCCG---GUCGUGCG-----UGCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 98014 0.71 0.58653
Target:  5'- cAAG-UGGCCAGCGUGCACGUCGGGc- -3'
miRNA:   3'- -UUCuGCCGGUCGUGCGUGCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 96687 0.67 0.817694
Target:  5'- cGGACGGCCguacacaaaaAGCggguucggcguugACGCAcCGCCAAAa- -3'
miRNA:   3'- uUCUGCCGG----------UCG-------------UGCGU-GCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 96309 0.66 0.835955
Target:  5'- -cGACacGCCGGCGCGCAaguguggacUGCCGAAa- -3'
miRNA:   3'- uuCUGc-CGGUCGUGCGU---------GCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 93516 0.66 0.844351
Target:  5'- -cGACGGCgCAaauGCACGCGuCgGCCGAAa- -3'
miRNA:   3'- uuCUGCCG-GU---CGUGCGU-G-CGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 93352 0.66 0.844351
Target:  5'- uGGACGGUguGUAuuuucgacUGCACGCCAc--- -3'
miRNA:   3'- uUCUGCCGguCGU--------GCGUGCGGUuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.