Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 79867 | 0.66 | 0.844351 |
Target: 5'- -cGGCGGgCAGCGgcauaacgaGUGCGCCAAGUa -3' miRNA: 3'- uuCUGCCgGUCGUg--------CGUGCGGUUUAc -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 75372 | 0.69 | 0.691541 |
Target: 5'- ---uCGGCCAGCAgCGaaaACGCCGAAa- -3' miRNA: 3'- uucuGCCGGUCGU-GCg--UGCGGUUUac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 73799 | 0.68 | 0.74265 |
Target: 5'- --cACGGCCugcuGCAgGUugGCCAAAa- -3' miRNA: 3'- uucUGCCGGu---CGUgCGugCGGUUUac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 72955 | 0.79 | 0.21596 |
Target: 5'- cAAGACGG-CAGCGCGCGcCGCCAAcgcGUGg -3' miRNA: 3'- -UUCUGCCgGUCGUGCGU-GCGGUU---UAC- -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 72285 | 0.67 | 0.818582 |
Target: 5'- uGGACGGUuuGCACGUgugccuaauugACGCCAAc-- -3' miRNA: 3'- uUCUGCCGguCGUGCG-----------UGCGGUUuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 69268 | 0.68 | 0.762447 |
Target: 5'- uGGACGGCguGCGCGguCGCg----- -3' miRNA: 3'- uUCUGCCGguCGUGCguGCGguuuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 67546 | 0.73 | 0.455858 |
Target: 5'- cGAGGCGGCacaaACGCGCGCCGAGc- -3' miRNA: 3'- -UUCUGCCGgucgUGCGUGCGGUUUac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 63923 | 0.66 | 0.868284 |
Target: 5'- cGGACGGUUcGCACGCgguGCG-CGAAUGu -3' miRNA: 3'- uUCUGCCGGuCGUGCG---UGCgGUUUAC- -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 61373 | 0.66 | 0.835955 |
Target: 5'- uGGGCGGCCGGCgaguugaugGCGUugGCg----- -3' miRNA: 3'- uUCUGCCGGUCG---------UGCGugCGguuuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 59423 | 0.66 | 0.860523 |
Target: 5'- --cACGGCCAGCGCGCccaGUaaCAAGUa -3' miRNA: 3'- uucUGCCGGUCGUGCGug-CG--GUUUAc -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 50824 | 0.69 | 0.712212 |
Target: 5'- uAGACGGgUuuguGCGCGUguuggucaGCGCCAGGUGa -3' miRNA: 3'- uUCUGCCgGu---CGUGCG--------UGCGGUUUAC- -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 49380 | 0.7 | 0.639114 |
Target: 5'- gAGGACGGCCcGCcCGaa-GCCAAGUGc -3' miRNA: 3'- -UUCUGCCGGuCGuGCgugCGGUUUAC- -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 47558 | 0.71 | 0.58653 |
Target: 5'- -uGAUGGCUGGCGCGUACuuGCCAGu-- -3' miRNA: 3'- uuCUGCCGGUCGUGCGUG--CGGUUuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 45453 | 0.71 | 0.565686 |
Target: 5'- cGGGCGGCgCAGCacGCGCACGCg----- -3' miRNA: 3'- uUCUGCCG-GUCG--UGCGUGCGguuuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 42201 | 0.67 | 0.827363 |
Target: 5'- aGGGACGGCgAcGCGCGCuACaaCGAGUGg -3' miRNA: 3'- -UUCUGCCGgU-CGUGCG-UGcgGUUUAC- -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 42173 | 0.7 | 0.639114 |
Target: 5'- gGAGuuGGCCAGCGuCGCGucCGCCGAc-- -3' miRNA: 3'- -UUCugCCGGUCGU-GCGU--GCGGUUuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 41613 | 0.7 | 0.649648 |
Target: 5'- --uGCGGaCAGCGCGUGCGCCAu--- -3' miRNA: 3'- uucUGCCgGUCGUGCGUGCGGUuuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 39803 | 0.67 | 0.794934 |
Target: 5'- -uGGCGGCCAaCACGCgugcaaccaaacgccGCGCCAc--- -3' miRNA: 3'- uuCUGCCGGUcGUGCG---------------UGCGGUuuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 31626 | 0.73 | 0.455858 |
Target: 5'- -uGGCGGCCAacggucaguGCACGCGCGCgGAc-- -3' miRNA: 3'- uuCUGCCGGU---------CGUGCGUGCGgUUuac -5' |
|||||||
22966 | 5' | -55.8 | NC_005137.2 | + | 28886 | 0.66 | 0.835955 |
Target: 5'- --cAUGGCUAcuaaacGCGCGCACGCUAgcAAUGa -3' miRNA: 3'- uucUGCCGGU------CGUGCGUGCGGU--UUAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home