miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22966 5' -55.8 NC_005137.2 + 69268 0.68 0.762447
Target:  5'- uGGACGGCguGCGCGguCGCg----- -3'
miRNA:   3'- uUCUGCCGguCGUGCguGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 127623 0.68 0.772166
Target:  5'- uGAG-UGGCCGGCACGU-UGCCAGc-- -3'
miRNA:   3'- -UUCuGCCGGUCGUGCGuGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 1681 0.67 0.781753
Target:  5'- --cGCGGUCAGCaACGCGCGCa----- -3'
miRNA:   3'- uucUGCCGGUCG-UGCGUGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 39803 0.67 0.794934
Target:  5'- -uGGCGGCCAaCACGCgugcaaccaaacgccGCGCCAc--- -3'
miRNA:   3'- uuCUGCCGGUcGUGCG---------------UGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 103060 0.67 0.80049
Target:  5'- -uGACGGCCu---CGUACGCCGuGUGc -3'
miRNA:   3'- uuCUGCCGGucguGCGUGCGGUuUAC- -5'
22966 5' -55.8 NC_005137.2 + 11308 0.67 0.809622
Target:  5'- cGGGCGuGgUGGCACGCGCaGCCAAc-- -3'
miRNA:   3'- uUCUGC-CgGUCGUGCGUG-CGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 96687 0.67 0.817694
Target:  5'- cGGACGGCCguacacaaaaAGCggguucggcguugACGCAcCGCCAAAa- -3'
miRNA:   3'- uUCUGCCGG----------UCG-------------UGCGU-GCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 130609 0.67 0.818582
Target:  5'- -uGACGaaaGCgCGGaCACGCGCGCCGAc-- -3'
miRNA:   3'- uuCUGC---CG-GUC-GUGCGUGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 72285 0.67 0.818582
Target:  5'- uGGACGGUuuGCACGUgugccuaauugACGCCAAc-- -3'
miRNA:   3'- uUCUGCCGguCGUGCG-----------UGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 7177 0.67 0.827363
Target:  5'- -cGACgaGGCCGugacGCGCGUGCGCCAc--- -3'
miRNA:   3'- uuCUG--CCGGU----CGUGCGUGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 42201 0.67 0.827363
Target:  5'- aGGGACGGCgAcGCGCGCuACaaCGAGUGg -3'
miRNA:   3'- -UUCUGCCGgU-CGUGCG-UGcgGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 96309 0.66 0.835955
Target:  5'- -cGACacGCCGGCGCGCAaguguggacUGCCGAAa- -3'
miRNA:   3'- uuCUGc-CGGUCGUGCGU---------GCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 25741 0.66 0.835955
Target:  5'- --uACGGCCAGgACGUuuGCCGAu-- -3'
miRNA:   3'- uucUGCCGGUCgUGCGugCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 61373 0.66 0.835955
Target:  5'- uGGGCGGCCGGCgaguugaugGCGUugGCg----- -3'
miRNA:   3'- uUCUGCCGGUCG---------UGCGugCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 28886 0.66 0.835955
Target:  5'- --cAUGGCUAcuaaacGCGCGCACGCUAgcAAUGa -3'
miRNA:   3'- uucUGCCGGU------CGUGCGUGCGGU--UUAC- -5'
22966 5' -55.8 NC_005137.2 + 99966 0.66 0.835955
Target:  5'- --cGCGGCC-GCGCGCcucuucguGCGCCAGc-- -3'
miRNA:   3'- uucUGCCGGuCGUGCG--------UGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 99332 0.66 0.835955
Target:  5'- aAGGAUGGCaaaCAGCGCGUgguacGCGUCGGAa- -3'
miRNA:   3'- -UUCUGCCG---GUCGUGCG-----UGCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 93516 0.66 0.844351
Target:  5'- -cGACGGCgCAaauGCACGCGuCgGCCGAAa- -3'
miRNA:   3'- uuCUGCCG-GU---CGUGCGU-G-CGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 79867 0.66 0.844351
Target:  5'- -cGGCGGgCAGCGgcauaacgaGUGCGCCAAGUa -3'
miRNA:   3'- uuCUGCCgGUCGUg--------CGUGCGGUUUAc -5'
22966 5' -55.8 NC_005137.2 + 93352 0.66 0.844351
Target:  5'- uGGACGGUguGUAuuuucgacUGCACGCCAc--- -3'
miRNA:   3'- uUCUGCCGguCGU--------GCGUGCGGUuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.