miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22966 5' -55.8 NC_005137.2 + 96687 0.67 0.817694
Target:  5'- cGGACGGCCguacacaaaaAGCggguucggcguugACGCAcCGCCAAAa- -3'
miRNA:   3'- uUCUGCCGG----------UCG-------------UGCGU-GCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 11308 0.67 0.809622
Target:  5'- cGGGCGuGgUGGCACGCGCaGCCAAc-- -3'
miRNA:   3'- uUCUGC-CgGUCGUGCGUG-CGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 103060 0.67 0.80049
Target:  5'- -uGACGGCCu---CGUACGCCGuGUGc -3'
miRNA:   3'- uuCUGCCGGucguGCGUGCGGUuUAC- -5'
22966 5' -55.8 NC_005137.2 + 39803 0.67 0.794934
Target:  5'- -uGGCGGCCAaCACGCgugcaaccaaacgccGCGCCAc--- -3'
miRNA:   3'- uuCUGCCGGUcGUGCG---------------UGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 1681 0.67 0.781753
Target:  5'- --cGCGGUCAGCaACGCGCGCa----- -3'
miRNA:   3'- uucUGCCGGUCG-UGCGUGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 127623 0.68 0.772166
Target:  5'- uGAG-UGGCCGGCACGU-UGCCAGc-- -3'
miRNA:   3'- -UUCuGCCGGUCGUGCGuGCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 69268 0.68 0.762447
Target:  5'- uGGACGGCguGCGCGguCGCg----- -3'
miRNA:   3'- uUCUGCCGguCGUGCguGCGguuuac -5'
22966 5' -55.8 NC_005137.2 + 73799 0.68 0.74265
Target:  5'- --cACGGCCugcuGCAgGUugGCCAAAa- -3'
miRNA:   3'- uucUGCCGGu---CGUgCGugCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 125050 0.68 0.732593
Target:  5'- gGAGcCGGgCGGCGCG-GCGCCGGAUc -3'
miRNA:   3'- -UUCuGCCgGUCGUGCgUGCGGUUUAc -5'
22966 5' -55.8 NC_005137.2 + 114797 0.68 0.732593
Target:  5'- uGGGCGGCUugcGCACGUcgucguCGUCAGAUGu -3'
miRNA:   3'- uUCUGCCGGu--CGUGCGu-----GCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 50824 0.69 0.712212
Target:  5'- uAGACGGgUuuguGCGCGUguuggucaGCGCCAGGUGa -3'
miRNA:   3'- uUCUGCCgGu---CGUGCG--------UGCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 75372 0.69 0.691541
Target:  5'- ---uCGGCCAGCAgCGaaaACGCCGAAa- -3'
miRNA:   3'- uucuGCCGGUCGU-GCg--UGCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 28075 0.69 0.670661
Target:  5'- cAGACGGCuguacacgCAGCGCgGCcUGCCGGGUGa -3'
miRNA:   3'- uUCUGCCG--------GUCGUG-CGuGCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 41613 0.7 0.649648
Target:  5'- --uGCGGaCAGCGCGUGCGCCAu--- -3'
miRNA:   3'- uucUGCCgGUCGUGCGUGCGGUuuac -5'
22966 5' -55.8 NC_005137.2 + 49380 0.7 0.639114
Target:  5'- gAGGACGGCCcGCcCGaa-GCCAAGUGc -3'
miRNA:   3'- -UUCUGCCGGuCGuGCgugCGGUUUAC- -5'
22966 5' -55.8 NC_005137.2 + 42173 0.7 0.639114
Target:  5'- gGAGuuGGCCAGCGuCGCGucCGCCGAc-- -3'
miRNA:   3'- -UUCugCCGGUCGU-GCGU--GCGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 110456 0.7 0.622252
Target:  5'- --cGCGGCCGGCGCGUAcacggggucacuaacCGCCAGcUGu -3'
miRNA:   3'- uucUGCCGGUCGUGCGU---------------GCGGUUuAC- -5'
22966 5' -55.8 NC_005137.2 + 98014 0.71 0.58653
Target:  5'- cAAG-UGGCCAGCGUGCACGUCGGGc- -3'
miRNA:   3'- -UUCuGCCGGUCGUGCGUGCGGUUUac -5'
22966 5' -55.8 NC_005137.2 + 47558 0.71 0.58653
Target:  5'- -uGAUGGCUGGCGCGUACuuGCCAGu-- -3'
miRNA:   3'- uuCUGCCGGUCGUGCGUG--CGGUUuac -5'
22966 5' -55.8 NC_005137.2 + 45453 0.71 0.565686
Target:  5'- cGGGCGGCgCAGCacGCGCACGCg----- -3'
miRNA:   3'- uUCUGCCG-GUCG--UGCGUGCGguuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.