Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22966 | 5' | -55.8 | NC_005137.2 | + | 110626 | 0.72 | 0.494616 |
|
Target: 5'- -uGACGGCCGuGCACaaaCGCGCCGAcgGc -3' miRNA: 3'- uuCUGCCGGU-CGUGc--GUGCGGUUuaC- -5' |
|||||||
| 22966 | 5' | -55.8 | NC_005137.2 | + | 31626 | 0.73 | 0.455858 |
|
Target: 5'- -uGGCGGCCAacggucaguGCACGCGCGCgGAc-- -3' miRNA: 3'- uuCUGCCGGU---------CGUGCGUGCGgUUuac -5' |
|||||||
| 22966 | 5' | -55.8 | NC_005137.2 | + | 67546 | 0.73 | 0.455858 |
|
Target: 5'- cGAGGCGGCacaaACGCGCGCCGAGc- -3' miRNA: 3'- -UUCUGCCGgucgUGCGUGCGGUUUac -5' |
|||||||
| 22966 | 5' | -55.8 | NC_005137.2 | + | 104225 | 0.74 | 0.418796 |
|
Target: 5'- cGAGcCGGCCAGCACGacgaagGCGCCAc--- -3' miRNA: 3'- -UUCuGCCGGUCGUGCg-----UGCGGUuuac -5' |
|||||||
| 22966 | 5' | -55.8 | NC_005137.2 | + | 9265 | 0.75 | 0.383623 |
|
Target: 5'- uGAGACGGCUuguuGCGCGCGCGCa----- -3' miRNA: 3'- -UUCUGCCGGu---CGUGCGUGCGguuuac -5' |
|||||||
| 22966 | 5' | -55.8 | NC_005137.2 | + | 72955 | 0.79 | 0.21596 |
|
Target: 5'- cAAGACGG-CAGCGCGCGcCGCCAAcgcGUGg -3' miRNA: 3'- -UUCUGCCgGUCGUGCGU-GCGGUU---UAC- -5' |
|||||||
| 22966 | 5' | -55.8 | NC_005137.2 | + | 116290 | 1.06 | 0.0034 |
|
Target: 5'- gAAGACGGCCAGCACGCACGCCAAAUGu -3' miRNA: 3'- -UUCUGCCGGUCGUGCGUGCGGUUUAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home