miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22967 5' -54.4 NC_005137.2 + 3056 0.66 0.931315
Target:  5'- cACGcCGGACUugguuauuagcacugUGUGUGGUUGCAG-GUa -3'
miRNA:   3'- uUGC-GCCUGG---------------GCAUACUAACGUCgCG- -5'
22967 5' -54.4 NC_005137.2 + 78548 0.66 0.92919
Target:  5'- uACGCGGGCUCagcgGAUUG-AGCGUc -3'
miRNA:   3'- uUGCGCCUGGGcauaCUAACgUCGCG- -5'
22967 5' -54.4 NC_005137.2 + 93865 0.66 0.923699
Target:  5'- cACGCaccGGACUCGgugAUcGAUUGCgauccGGCGCu -3'
miRNA:   3'- uUGCG---CCUGGGCa--UA-CUAACG-----UCGCG- -5'
22967 5' -54.4 NC_005137.2 + 6935 0.66 0.923699
Target:  5'- cAACGCGGaACCUGUGcGAa-GCGGUGg -3'
miRNA:   3'- -UUGCGCC-UGGGCAUaCUaaCGUCGCg -5'
22967 5' -54.4 NC_005137.2 + 75969 0.66 0.917957
Target:  5'- uGACGCGGcGCgCGU-UGGUgcaCGGCGCa -3'
miRNA:   3'- -UUGCGCC-UGgGCAuACUAac-GUCGCG- -5'
22967 5' -54.4 NC_005137.2 + 55580 0.66 0.911962
Target:  5'- cAugGCGGACgCGg------GCGGCGCc -3'
miRNA:   3'- -UugCGCCUGgGCauacuaaCGUCGCG- -5'
22967 5' -54.4 NC_005137.2 + 98194 0.66 0.911962
Target:  5'- aGGCGCugcuGGACCCGcuc----GCAGCGCc -3'
miRNA:   3'- -UUGCG----CCUGGGCauacuaaCGUCGCG- -5'
22967 5' -54.4 NC_005137.2 + 24466 0.67 0.881204
Target:  5'- uGCGCGGACgCGgugGAcUGCaacaagccgucugucAGCGCg -3'
miRNA:   3'- uUGCGCCUGgGCauaCUaACG---------------UCGCG- -5'
22967 5' -54.4 NC_005137.2 + 30462 0.67 0.878289
Target:  5'- uGCGCGG-CUCGUuuuauaGAguugagGCGGCGCg -3'
miRNA:   3'- uUGCGCCuGGGCAua----CUaa----CGUCGCG- -5'
22967 5' -54.4 NC_005137.2 + 124960 0.68 0.863166
Target:  5'- gAACGCGGcGCCgGUgAUGGggcGCuGCGCu -3'
miRNA:   3'- -UUGCGCC-UGGgCA-UACUaa-CGuCGCG- -5'
22967 5' -54.4 NC_005137.2 + 33341 0.68 0.847162
Target:  5'- cGACGCGcaauuGACCCGUGUauaguaaaauggGAaUGCcGCGCu -3'
miRNA:   3'- -UUGCGC-----CUGGGCAUA------------CUaACGuCGCG- -5'
22967 5' -54.4 NC_005137.2 + 99949 0.68 0.847162
Target:  5'- cGCGCGGcgACCuCGUGUacaGAUUGauauaaAGCGCu -3'
miRNA:   3'- uUGCGCC--UGG-GCAUA---CUAACg-----UCGCG- -5'
22967 5' -54.4 NC_005137.2 + 32471 0.68 0.838847
Target:  5'- -cCGCGGACCa--AUGGUUaaGCAGCGa -3'
miRNA:   3'- uuGCGCCUGGgcaUACUAA--CGUCGCg -5'
22967 5' -54.4 NC_005137.2 + 45186 0.68 0.838847
Target:  5'- uACGaCGGGCCCGUAaaGAUauuUGUGGcCGCg -3'
miRNA:   3'- uUGC-GCCUGGGCAUa-CUA---ACGUC-GCG- -5'
22967 5' -54.4 NC_005137.2 + 5 0.69 0.794458
Target:  5'- uACGCGGGgCCa-GUGAacaGCGGCGCg -3'
miRNA:   3'- uUGCGCCUgGGcaUACUaa-CGUCGCG- -5'
22967 5' -54.4 NC_005137.2 + 108581 0.7 0.726098
Target:  5'- --gGCGGcgcGCCCGUGUGcuuuuacgUGguGCGCu -3'
miRNA:   3'- uugCGCC---UGGGCAUACua------ACguCGCG- -5'
22967 5' -54.4 NC_005137.2 + 130008 0.72 0.64302
Target:  5'- aAACGUGGGCUgagGUGAagGCGGCGCu -3'
miRNA:   3'- -UUGCGCCUGGgcaUACUaaCGUCGCG- -5'
22967 5' -54.4 NC_005137.2 + 92764 0.72 0.611458
Target:  5'- cAACGCGGACCCGUAU--UUGCuuaauuGUGa -3'
miRNA:   3'- -UUGCGCCUGGGCAUAcuAACGu-----CGCg -5'
22967 5' -54.4 NC_005137.2 + 63001 0.74 0.518457
Target:  5'- --gGCGGACCC--AUGG-UGCGGCGCc -3'
miRNA:   3'- uugCGCCUGGGcaUACUaACGUCGCG- -5'
22967 5' -54.4 NC_005137.2 + 100410 0.79 0.28647
Target:  5'- cGACGCGcGCCCGUGc-GUUGCGGCGCc -3'
miRNA:   3'- -UUGCGCcUGGGCAUacUAACGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.