miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22968 5' -53.6 NC_005137.2 + 119616 1.11 0.002947
Target:  5'- uUUCCAGAACGCACCACCACAAACCCCa -3'
miRNA:   3'- -AAGGUCUUGCGUGGUGGUGUUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 46728 0.76 0.444581
Target:  5'- uUUCCAc-GCGCGCCACCACcAGCCUg -3'
miRNA:   3'- -AAGGUcuUGCGUGGUGGUGuUUGGGg -5'
22968 5' -53.6 NC_005137.2 + 17632 0.75 0.5332
Target:  5'- --aCGGc-UGCACCACCACcAGCCCCa -3'
miRNA:   3'- aagGUCuuGCGUGGUGGUGuUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 70194 0.75 0.5332
Target:  5'- gUUCGGGGCGCACCACguaCGCGGugCCg -3'
miRNA:   3'- aAGGUCUUGCGUGGUG---GUGUUugGGg -5'
22968 5' -53.6 NC_005137.2 + 63099 0.73 0.616746
Target:  5'- -gCCAGAaucuggcgACGCACCACCGuc--CCCCa -3'
miRNA:   3'- aaGGUCU--------UGCGUGGUGGUguuuGGGG- -5'
22968 5' -53.6 NC_005137.2 + 99989 0.73 0.637913
Target:  5'- -gCCAGcAGCGCacgcaccaACCGCCACcAACUCCa -3'
miRNA:   3'- aaGGUC-UUGCG--------UGGUGGUGuUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 47449 0.71 0.71856
Target:  5'- -aCCAacGCGUuauugcgcucguugGCCGCCAUGAGCCCCc -3'
miRNA:   3'- aaGGUcuUGCG--------------UGGUGGUGUUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 29526 0.7 0.771613
Target:  5'- uUUUguGggUGCGCCGCgACAacAACCCg -3'
miRNA:   3'- -AAGguCuuGCGUGGUGgUGU--UUGGGg -5'
22968 5' -53.6 NC_005137.2 + 51410 0.7 0.790742
Target:  5'- -aCCAacguUGCGCCGCUACGAuuuGCCCCc -3'
miRNA:   3'- aaGGUcuu-GCGUGGUGGUGUU---UGGGG- -5'
22968 5' -53.6 NC_005137.2 + 129705 0.7 0.797297
Target:  5'- -gUCAGAACGCaaaagauuuucaauGCgCGCCACAAugCUCg -3'
miRNA:   3'- aaGGUCUUGCG--------------UG-GUGGUGUUugGGG- -5'
22968 5' -53.6 NC_005137.2 + 79821 0.69 0.80926
Target:  5'- gUCCGccgcCGCGCCugCACAAACCg- -3'
miRNA:   3'- aAGGUcuu-GCGUGGugGUGUUUGGgg -5'
22968 5' -53.6 NC_005137.2 + 97624 0.69 0.818267
Target:  5'- -aCCugcgcGAGCGUcacGCCGCCACuaccauguGCCCCg -3'
miRNA:   3'- aaGGu----CUUGCG---UGGUGGUGuu------UGGGG- -5'
22968 5' -53.6 NC_005137.2 + 98152 0.69 0.835727
Target:  5'- -gCCAcuuggcGGGCGCACCcacGCCGCGcGCCCg -3'
miRNA:   3'- aaGGU------CUUGCGUGG---UGGUGUuUGGGg -5'
22968 5' -53.6 NC_005137.2 + 125204 0.69 0.844165
Target:  5'- aUCCGGcgcCGCGCCGCC-C-GGCUCCg -3'
miRNA:   3'- aAGGUCuu-GCGUGGUGGuGuUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 81457 0.69 0.844165
Target:  5'- cUCCgAGuGGCGCAUCACguUAAACCUCa -3'
miRNA:   3'- aAGG-UC-UUGCGUGGUGguGUUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 28050 0.68 0.860414
Target:  5'- -gCCGGgcgaugacccGugGCGCCGCCACGcgaucgccAACCCg -3'
miRNA:   3'- aaGGUC----------UugCGUGGUGGUGU--------UUGGGg -5'
22968 5' -53.6 NC_005137.2 + 168 0.68 0.868212
Target:  5'- -gCCuG-ACGCGCCGCuguuCACuGGCCCCg -3'
miRNA:   3'- aaGGuCuUGCGUGGUG----GUGuUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 57088 0.68 0.875782
Target:  5'- gUCCAcgcacGGGCGCGCCAaaACGAugacGCCCUu -3'
miRNA:   3'- aAGGU-----CUUGCGUGGUggUGUU----UGGGG- -5'
22968 5' -53.6 NC_005137.2 + 64088 0.68 0.88312
Target:  5'- aUCgGGAcauucGCGCACCGCgUGCGAACCguCCg -3'
miRNA:   3'- aAGgUCU-----UGCGUGGUG-GUGUUUGG--GG- -5'
22968 5' -53.6 NC_005137.2 + 93424 0.68 0.88312
Target:  5'- ------uACGCGCCugUACAAACCCg -3'
miRNA:   3'- aaggucuUGCGUGGugGUGUUUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.