miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22968 5' -53.6 NC_005137.2 + 168 0.68 0.868212
Target:  5'- -gCCuG-ACGCGCCGCuguuCACuGGCCCCg -3'
miRNA:   3'- aaGGuCuUGCGUGGUG----GUGuUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 7170 0.66 0.932946
Target:  5'- -gCCGuGACGCGCgugCGCCACGuuGugCCCg -3'
miRNA:   3'- aaGGUcUUGCGUG---GUGGUGU--UugGGG- -5'
22968 5' -53.6 NC_005137.2 + 9367 0.67 0.922007
Target:  5'- aUUguGAACGUGCCAUCGCGuuuGCCa- -3'
miRNA:   3'- aAGguCUUGCGUGGUGGUGUu--UGGgg -5'
22968 5' -53.6 NC_005137.2 + 11156 0.67 0.910046
Target:  5'- --gCuGcGCGUGCCACCACGcccGAUCCCa -3'
miRNA:   3'- aagGuCuUGCGUGGUGGUGU---UUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 13007 0.66 0.932946
Target:  5'- aUCCAGAuUGCGCCggGCUAC-GGCCUg -3'
miRNA:   3'- aAGGUCUuGCGUGG--UGGUGuUUGGGg -5'
22968 5' -53.6 NC_005137.2 + 17230 0.67 0.897076
Target:  5'- gUCCugcaaguGAACGCAUUGCCACAuuaAACUCg -3'
miRNA:   3'- aAGGu------CUUGCGUGGUGGUGU---UUGGGg -5'
22968 5' -53.6 NC_005137.2 + 17632 0.75 0.5332
Target:  5'- --aCGGc-UGCACCACCACcAGCCCCa -3'
miRNA:   3'- aagGUCuuGCGUGGUGGUGuUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 17760 0.67 0.903686
Target:  5'- cUCCGGAACgacguGCACgCGCCGCAAAUa-- -3'
miRNA:   3'- aAGGUCUUG-----CGUG-GUGGUGUUUGggg -5'
22968 5' -53.6 NC_005137.2 + 23220 0.67 0.916154
Target:  5'- aUCCAGuucucGCGCuugucguCCGCCACGGugaacACCuCCa -3'
miRNA:   3'- aAGGUCu----UGCGu------GGUGGUGUU-----UGG-GG- -5'
22968 5' -53.6 NC_005137.2 + 28050 0.68 0.860414
Target:  5'- -gCCGGgcgaugacccGugGCGCCGCCACGcgaucgccAACCCg -3'
miRNA:   3'- aaGGUC----------UugCGUGGUGGUGU--------UUGGGg -5'
22968 5' -53.6 NC_005137.2 + 29526 0.7 0.771613
Target:  5'- uUUUguGggUGCGCCGCgACAacAACCCg -3'
miRNA:   3'- -AAGguCuuGCGUGGUGgUGU--UUGGGg -5'
22968 5' -53.6 NC_005137.2 + 33978 0.66 0.942864
Target:  5'- -gCCGGuuAGCGUcguuGCCGCCGCcauuAAGCUCCg -3'
miRNA:   3'- aaGGUC--UUGCG----UGGUGGUG----UUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 46728 0.76 0.444581
Target:  5'- uUUCCAc-GCGCGCCACCACcAGCCUg -3'
miRNA:   3'- -AAGGUcuUGCGUGGUGGUGuUUGGGg -5'
22968 5' -53.6 NC_005137.2 + 47449 0.71 0.71856
Target:  5'- -aCCAacGCGUuauugcgcucguugGCCGCCAUGAGCCCCc -3'
miRNA:   3'- aaGGUcuUGCG--------------UGGUGGUGUUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 48209 0.67 0.897076
Target:  5'- gUCgAGAugGCACgCGCgGCAaauggaacaauGACCCUu -3'
miRNA:   3'- aAGgUCUugCGUG-GUGgUGU-----------UUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 51410 0.7 0.790742
Target:  5'- -aCCAacguUGCGCCGCUACGAuuuGCCCCc -3'
miRNA:   3'- aaGGUcuu-GCGUGGUGGUGUU---UGGGG- -5'
22968 5' -53.6 NC_005137.2 + 57088 0.68 0.875782
Target:  5'- gUCCAcgcacGGGCGCGCCAaaACGAugacGCCCUu -3'
miRNA:   3'- aAGGU-----CUUGCGUGGUggUGUU----UGGGG- -5'
22968 5' -53.6 NC_005137.2 + 63099 0.73 0.616746
Target:  5'- -gCCAGAaucuggcgACGCACCACCGuc--CCCCa -3'
miRNA:   3'- aaGGUCU--------UGCGUGGUGGUguuuGGGG- -5'
22968 5' -53.6 NC_005137.2 + 64088 0.68 0.88312
Target:  5'- aUCgGGAcauucGCGCACCGCgUGCGAACCguCCg -3'
miRNA:   3'- aAGgUCU-----UGCGUGGUG-GUGUUUGG--GG- -5'
22968 5' -53.6 NC_005137.2 + 70194 0.75 0.5332
Target:  5'- gUUCGGGGCGCACCACguaCGCGGugCCg -3'
miRNA:   3'- aAGGUCUUGCGUGGUG---GUGUUugGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.