miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22968 5' -53.6 NC_005137.2 + 73798 0.67 0.897076
Target:  5'- aUUCGGAcACGUugACCACCugGuuGACCCg -3'
miRNA:   3'- aAGGUCU-UGCG--UGGUGGugU--UUGGGg -5'
22968 5' -53.6 NC_005137.2 + 79821 0.69 0.80926
Target:  5'- gUCCGccgcCGCGCCugCACAAACCg- -3'
miRNA:   3'- aAGGUcuu-GCGUGGugGUGUUUGGgg -5'
22968 5' -53.6 NC_005137.2 + 81457 0.69 0.844165
Target:  5'- cUCCgAGuGGCGCAUCACguUAAACCUCa -3'
miRNA:   3'- aAGG-UC-UUGCGUGGUGguGUUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 88021 0.66 0.927604
Target:  5'- -gCCGGcGCGgcCACCGCCgagGCGGGCCaCCa -3'
miRNA:   3'- aaGGUCuUGC--GUGGUGG---UGUUUGG-GG- -5'
22968 5' -53.6 NC_005137.2 + 93421 0.66 0.927604
Target:  5'- -aCCGGcg-GC-UgGCCGCAGACCCCg -3'
miRNA:   3'- aaGGUCuugCGuGgUGGUGUUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 93424 0.68 0.88312
Target:  5'- ------uACGCGCCugUACAAACCCg -3'
miRNA:   3'- aaggucuUGCGUGGugGUGUUUGGGg -5'
22968 5' -53.6 NC_005137.2 + 97624 0.69 0.818267
Target:  5'- -aCCugcgcGAGCGUcacGCCGCCACuaccauguGCCCCg -3'
miRNA:   3'- aaGGu----CUUGCG---UGGUGGUGuu------UGGGG- -5'
22968 5' -53.6 NC_005137.2 + 98152 0.69 0.835727
Target:  5'- -gCCAcuuggcGGGCGCACCcacGCCGCGcGCCCg -3'
miRNA:   3'- aaGGU------CUUGCGUGG---UGGUGUuUGGGg -5'
22968 5' -53.6 NC_005137.2 + 99359 0.66 0.951775
Target:  5'- -gUCGGAACaauGCACgGcgcCCGCAAACCCg -3'
miRNA:   3'- aaGGUCUUG---CGUGgU---GGUGUUUGGGg -5'
22968 5' -53.6 NC_005137.2 + 99989 0.73 0.637913
Target:  5'- -gCCAGcAGCGCacgcaccaACCGCCACcAACUCCa -3'
miRNA:   3'- aaGGUC-UUGCG--------UGGUGGUGuUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 118494 0.66 0.945643
Target:  5'- -cCCAuGGugGCcaguauaACCGCCACAAucugacgcgugucgGCCCUg -3'
miRNA:   3'- aaGGU-CUugCG-------UGGUGGUGUU--------------UGGGG- -5'
22968 5' -53.6 NC_005137.2 + 119616 1.11 0.002947
Target:  5'- uUUCCAGAACGCACCACCACAAACCCCa -3'
miRNA:   3'- -AAGGUCUUGCGUGGUGGUGUUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 120439 0.67 0.922007
Target:  5'- gUUCGGAcaGCugCACCuCGGGCUCCa -3'
miRNA:   3'- aAGGUCUugCGugGUGGuGUUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 125204 0.69 0.844165
Target:  5'- aUCCGGcgcCGCGCCGCC-C-GGCUCCg -3'
miRNA:   3'- aAGGUCuu-GCGUGGUGGuGuUUGGGG- -5'
22968 5' -53.6 NC_005137.2 + 128927 0.66 0.951775
Target:  5'- aUUUUAGGGCGCGCgAUCGCGuuuACCUUu -3'
miRNA:   3'- -AAGGUCUUGCGUGgUGGUGUu--UGGGG- -5'
22968 5' -53.6 NC_005137.2 + 129705 0.7 0.797297
Target:  5'- -gUCAGAACGCaaaagauuuucaauGCgCGCCACAAugCUCg -3'
miRNA:   3'- aaGGUCUUGCG--------------UG-GUGGUGUUugGGG- -5'
22968 5' -53.6 NC_005137.2 + 130252 0.66 0.951775
Target:  5'- -gCCA-AACGUGCCGCCGCc-ACCgCCg -3'
miRNA:   3'- aaGGUcUUGCGUGGUGGUGuuUGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.