miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 100028 0.74 0.654345
Target:  5'- uGCGCaaGCACGCGGUccgacgcGGCGCGcgGCGCg -3'
miRNA:   3'- -CGCG--CGUGUGUCGaa-----UCGUGCa-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 21846 0.74 0.643795
Target:  5'- aCGCagaaCACugGGCaacuugAGCACGUACGCg -3'
miRNA:   3'- cGCGc---GUGugUCGaa----UCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 2175 0.74 0.643795
Target:  5'- aGCGCGCGCuucaucaAGUUUAguuuGCGCGUuACGCa -3'
miRNA:   3'- -CGCGCGUGug-----UCGAAU----CGUGCA-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 105520 0.74 0.633234
Target:  5'- gGCGC-CACACGGCUgcUGGCACcGUuuuUGCa -3'
miRNA:   3'- -CGCGcGUGUGUCGA--AUCGUG-CAu--GCG- -5'
22969 3' -52.8 NC_005137.2 + 110676 0.74 0.622672
Target:  5'- gGCGUGCGCGgAGCccaucaagUAucgggucaugcGCGCGUGCGCa -3'
miRNA:   3'- -CGCGCGUGUgUCGa-------AU-----------CGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 96587 0.73 0.705594
Target:  5'- cCGCGCaaacgcaACGCGGCg-GGCGCGUcgccGCGCg -3'
miRNA:   3'- cGCGCG-------UGUGUCGaaUCGUGCA----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 72285 0.73 0.664877
Target:  5'- aCGUGC-CGCAGCguuaGGCgaACGUACGCc -3'
miRNA:   3'- cGCGCGuGUGUCGaa--UCG--UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 17469 0.73 0.696266
Target:  5'- uGCGaCGCGCACGucGCacAGCGCGUcaauguccuGCGCa -3'
miRNA:   3'- -CGC-GCGUGUGU--CGaaUCGUGCA---------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 131032 0.73 0.696266
Target:  5'- gGCGCGUcCGCGGCguacaauucaGGCGCGggcUGCGCg -3'
miRNA:   3'- -CGCGCGuGUGUCGaa--------UCGUGC---AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 84434 0.73 0.675381
Target:  5'- aGUGCGCAUuuGCAGaCUU-GCGCGUuauCGCu -3'
miRNA:   3'- -CGCGCGUG--UGUC-GAAuCGUGCAu--GCG- -5'
22969 3' -52.8 NC_005137.2 + 104708 0.73 0.706628
Target:  5'- aGCGCGC-CGCcGUUguaCGCGUACGCu -3'
miRNA:   3'- -CGCGCGuGUGuCGAaucGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 26648 0.73 0.703526
Target:  5'- cGUGCGCGuCGCAGCgcgAacacgacgacgcacGCACGUGCGa -3'
miRNA:   3'- -CGCGCGU-GUGUCGaa-U--------------CGUGCAUGCg -5'
22969 3' -52.8 NC_005137.2 + 112855 0.73 0.675381
Target:  5'- uCGCGCAUcgcuGCGGCUcgguccaagugaUAGCACGcgggcUGCGCg -3'
miRNA:   3'- cGCGCGUG----UGUCGA------------AUCGUGC-----AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 110724 0.73 0.675381
Target:  5'- gGUGUGCGCGCAG---AGCGCuuGUGCGCc -3'
miRNA:   3'- -CGCGCGUGUGUCgaaUCGUG--CAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 68664 0.73 0.663825
Target:  5'- cGUGCGCACGCgcguGGCggaugacAGCauaauaaGCGUGCGCa -3'
miRNA:   3'- -CGCGCGUGUG----UCGaa-----UCG-------UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 61656 0.72 0.754261
Target:  5'- uGCGCGacUugACGGCUUcuuGCACGUugucagguagcgugGCGCg -3'
miRNA:   3'- -CGCGC--GugUGUCGAAu--CGUGCA--------------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 72807 0.72 0.737269
Target:  5'- gGCGCGCGCugccguCuugauGUUUAGCAUGUaaaugaGCGCg -3'
miRNA:   3'- -CGCGCGUGu-----Gu----CGAAUCGUGCA------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 18311 0.72 0.737269
Target:  5'- cGCGCGgGCAUcGCgacuGCACGgACGCc -3'
miRNA:   3'- -CGCGCgUGUGuCGaau-CGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 122724 0.72 0.716922
Target:  5'- cGCGUGCugGgCGuGCUUAGCACGUuagugacccgGCGg -3'
miRNA:   3'- -CGCGCGugU-GU-CGAAUCGUGCA----------UGCg -5'
22969 3' -52.8 NC_005137.2 + 123849 0.72 0.716922
Target:  5'- uGUGaGCGCGCGGCUUA-CACGccGCGCa -3'
miRNA:   3'- -CGCgCGUGUGUCGAAUcGUGCa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.