miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 23488 0.66 0.9577
Target:  5'- aUGaCGCACGCuuuGCUaAGCACGcguUGCa -3'
miRNA:   3'- cGC-GCGUGUGu--CGAaUCGUGCau-GCG- -5'
22969 3' -52.8 NC_005137.2 + 23651 0.76 0.528905
Target:  5'- aCGUGCAaCGCGuGCUUAGCaaaGCGUGCGUc -3'
miRNA:   3'- cGCGCGU-GUGU-CGAAUCG---UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 24293 0.7 0.834989
Target:  5'- gGCGCGCugACAGac-GGCuuguugcaguccaccGCGUccGCGCa -3'
miRNA:   3'- -CGCGCGugUGUCgaaUCG---------------UGCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 24494 0.68 0.900379
Target:  5'- cGCGaCGCAaACGGCgu-GCAguguugUGUGCGCg -3'
miRNA:   3'- -CGC-GCGUgUGUCGaauCGU------GCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 25550 0.7 0.8202
Target:  5'- gGCGUuuGCACACAGUugUUGGCAcCGUAaacuuguuugccuuCGCg -3'
miRNA:   3'- -CGCG--CGUGUGUCG--AAUCGU-GCAU--------------GCG- -5'
22969 3' -52.8 NC_005137.2 + 26537 0.67 0.953329
Target:  5'- gGCGCGCGUACGGCaaguuugUUAGCgguaGCG-ACGUu -3'
miRNA:   3'- -CGCGCGUGUGUCG-------AAUCG----UGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 26648 0.73 0.703526
Target:  5'- cGUGCGCGuCGCAGCgcgAacacgacgacgcacGCACGUGCGa -3'
miRNA:   3'- -CGCGCGU-GUGUCGaa-U--------------CGUGCAUGCg -5'
22969 3' -52.8 NC_005137.2 + 26790 0.7 0.840075
Target:  5'- uGCGaCGCGCAC-GCUU-GUACGaGCGUc -3'
miRNA:   3'- -CGC-GCGUGUGuCGAAuCGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 27596 0.69 0.864386
Target:  5'- uGCGCGUACG-AGacaAGCGCGUGgGCc -3'
miRNA:   3'- -CGCGCGUGUgUCgaaUCGUGCAUgCG- -5'
22969 3' -52.8 NC_005137.2 + 29040 0.77 0.468347
Target:  5'- aGCGUGCGCGC-GUUUAGUagccaugACGUACGUg -3'
miRNA:   3'- -CGCGCGUGUGuCGAAUCG-------UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 30392 0.76 0.528905
Target:  5'- uGUGCGCACGC-GUUUAcCACGUAUGUa -3'
miRNA:   3'- -CGCGCGUGUGuCGAAUcGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 30533 0.69 0.893658
Target:  5'- cGCGUGCGCACA----GGCACGcauUACGg -3'
miRNA:   3'- -CGCGCGUGUGUcgaaUCGUGC---AUGCg -5'
22969 3' -52.8 NC_005137.2 + 30804 0.69 0.879491
Target:  5'- aCGCGCAC-CAGCaacacgUUGGgAgUGUGCGCg -3'
miRNA:   3'- cGCGCGUGuGUCG------AAUCgU-GCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 30967 0.76 0.528905
Target:  5'- aCGCGCACACucccaacGUguuGCugGUGCGCg -3'
miRNA:   3'- cGCGCGUGUGu------CGaauCGugCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 31004 0.66 0.968175
Target:  5'- cCGCGCACGCuGgUcGGCGCcgcUACGUc -3'
miRNA:   3'- cGCGCGUGUGuCgAaUCGUGc--AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 31227 0.75 0.591067
Target:  5'- cGCG-GCACAcCAGCUUGaacauggccGCGuCGUGCGCg -3'
miRNA:   3'- -CGCgCGUGU-GUCGAAU---------CGU-GCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 31396 0.75 0.559746
Target:  5'- aGCGCGCACgacGCGGCcauguucaAGCugGUguGCGCg -3'
miRNA:   3'- -CGCGCGUG---UGUCGaa------UCGugCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 31404 0.72 0.716922
Target:  5'- uGCGCGuCACcaaccgugGCAGCU--GCACGUcgACGCc -3'
miRNA:   3'- -CGCGC-GUG--------UGUCGAauCGUGCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 31782 0.69 0.884558
Target:  5'- cGCGCGUGCACuGaccgUUGGCcgccauaaaauccaGCGUGCGUu -3'
miRNA:   3'- -CGCGCGUGUGuCg---AAUCG--------------UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 32561 0.69 0.879491
Target:  5'- cCGUGCACGCGGCUgcuuGCGCuuuaacCGCc -3'
miRNA:   3'- cGCGCGUGUGUCGAau--CGUGcau---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.