miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 1585 0.66 0.971215
Target:  5'- uCGUGCACAaaauGCaaaAGCGCGUguuuaaucgGCGCg -3'
miRNA:   3'- cGCGCGUGUgu--CGaa-UCGUGCA---------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 1997 0.81 0.307316
Target:  5'- cCGCGUGCACAGCUcguGCACGcugcgGCGCa -3'
miRNA:   3'- cGCGCGUGUGUCGAau-CGUGCa----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 2160 0.69 0.893658
Target:  5'- cUGCGC-CGCAGCgu-GCACGagcugugcACGCg -3'
miRNA:   3'- cGCGCGuGUGUCGaauCGUGCa-------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 2175 0.74 0.643795
Target:  5'- aGCGCGCGCuucaucaAGUUUAguuuGCGCGUuACGCa -3'
miRNA:   3'- -CGCGCGUGug-----UCGAAU----CGUGCA-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 5644 0.66 0.968175
Target:  5'- aCGCGUAauCAGCUcugcgGGCACGgugcCGCg -3'
miRNA:   3'- cGCGCGUguGUCGAa----UCGUGCau--GCG- -5'
22969 3' -52.8 NC_005137.2 + 6983 0.7 0.854087
Target:  5'- uGCuGCGCACACGGacgAGCggucgccgggcacaACGUgGCGCa -3'
miRNA:   3'- -CG-CGCGUGUGUCgaaUCG--------------UGCA-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 7176 0.68 0.916686
Target:  5'- uCGCGCGCguuGCAGCgcauuucgaaccGGCGCGUGcCGUc -3'
miRNA:   3'- cGCGCGUG---UGUCGaa----------UCGUGCAU-GCG- -5'
22969 3' -52.8 NC_005137.2 + 8051 0.66 0.9577
Target:  5'- -gGUGCugACGGCguuccugcucGGCcCGUGCGUg -3'
miRNA:   3'- cgCGCGugUGUCGaa--------UCGuGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 9278 0.71 0.765082
Target:  5'- uGCGCGCGCGCAGUUguccaaucaaCACGUGuucuuUGCa -3'
miRNA:   3'- -CGCGCGUGUGUCGAauc-------GUGCAU-----GCG- -5'
22969 3' -52.8 NC_005137.2 + 10217 0.67 0.945083
Target:  5'- cCG-GCGCugGGCUgucacaAGCugGUguACGCg -3'
miRNA:   3'- cGCgCGUGugUCGAa-----UCGugCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 11219 0.66 0.9577
Target:  5'- uCGCGUAUACAGUUUuuucuGCGCGcACa- -3'
miRNA:   3'- cGCGCGUGUGUCGAAu----CGUGCaUGcg -5'
22969 3' -52.8 NC_005137.2 + 13212 0.68 0.905577
Target:  5'- uGUG-GCACuugucugccaaAGCUU-GCACGUACGCu -3'
miRNA:   3'- -CGCgCGUGug---------UCGAAuCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 14653 0.7 0.856496
Target:  5'- aGCGCGCACAaaucguuuaAGCUUG--ACGUaaACGCc -3'
miRNA:   3'- -CGCGCGUGUg--------UCGAAUcgUGCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 16050 0.67 0.939411
Target:  5'- uGUGCGU-CAUAGaCUgguauauaagcgAGCGCGUugGCu -3'
miRNA:   3'- -CGCGCGuGUGUC-GAa-----------UCGUGCAugCG- -5'
22969 3' -52.8 NC_005137.2 + 17469 0.73 0.696266
Target:  5'- uGCGaCGCGCACGucGCacAGCGCGUcaauguccuGCGCa -3'
miRNA:   3'- -CGC-GCGUGUGU--CGaaUCGUGCA---------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 18311 0.72 0.737269
Target:  5'- cGCGCGgGCAUcGCgacuGCACGgACGCc -3'
miRNA:   3'- -CGCGCgUGUGuCGaau-CGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 21131 0.67 0.940382
Target:  5'- uGCGUGCaaGCGCGGCaaaacGCGCGc-CGCa -3'
miRNA:   3'- -CGCGCG--UGUGUCGaau--CGUGCauGCG- -5'
22969 3' -52.8 NC_005137.2 + 21846 0.74 0.643795
Target:  5'- aCGCagaaCACugGGCaacuugAGCACGUACGCg -3'
miRNA:   3'- cGCGc---GUGugUCGaa----UCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 22315 0.67 0.930222
Target:  5'- cGCGCgGCuuGCACGGUUUucacguGCACGaauUugGCg -3'
miRNA:   3'- -CGCG-CG--UGUGUCGAAu-----CGUGC---AugCG- -5'
22969 3' -52.8 NC_005137.2 + 22432 0.71 0.795648
Target:  5'- -aGCGuCACGuCGGCgauuugGGCaACGUGCGCu -3'
miRNA:   3'- cgCGC-GUGU-GUCGaa----UCG-UGCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.