miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 45451 0.66 0.9577
Target:  5'- aGCGgGCgGCGCAGCa---CGCGcACGCg -3'
miRNA:   3'- -CGCgCG-UGUGUCGaaucGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 61854 0.66 0.971215
Target:  5'- cUGCGC-CACcGUUauaaaauuuuGCGCGUACGCu -3'
miRNA:   3'- cGCGCGuGUGuCGAau--------CGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 8051 0.66 0.9577
Target:  5'- -gGUGCugACGGCguuccugcucGGCcCGUGCGUg -3'
miRNA:   3'- cgCGCGugUGUCGaa--------UCGuGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 112401 0.66 0.964233
Target:  5'- cGCGauCGCGCACGGCgcgccauuguGCAaGUACGg -3'
miRNA:   3'- -CGC--GCGUGUGUCGaau-------CGUgCAUGCg -5'
22969 3' -52.8 NC_005137.2 + 69026 0.66 0.970921
Target:  5'- gGCGCGCAUcCGGCUUGaacuggaauuugcGgACGU-UGCa -3'
miRNA:   3'- -CGCGCGUGuGUCGAAU-------------CgUGCAuGCG- -5'
22969 3' -52.8 NC_005137.2 + 23488 0.66 0.9577
Target:  5'- aUGaCGCACGCuuuGCUaAGCACGcguUGCa -3'
miRNA:   3'- cGC-GCGUGUGu--CGAaUCGUGCau-GCG- -5'
22969 3' -52.8 NC_005137.2 + 104460 0.66 0.964913
Target:  5'- cGCaGCGC-CACGaCUUGuuGCACGUgugauGCGCa -3'
miRNA:   3'- -CG-CGCGuGUGUcGAAU--CGUGCA-----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 75972 0.66 0.9577
Target:  5'- cGCG-GCGCGC-GUUgguGCACG-GCGCa -3'
miRNA:   3'- -CGCgCGUGUGuCGAau-CGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 88509 0.66 0.971215
Target:  5'- uCGC-CGCGCAGCa-AGCGCcguGUGCGUu -3'
miRNA:   3'- cGCGcGUGUGUCGaaUCGUG---CAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 112227 0.66 0.961423
Target:  5'- uGCGCGCagugaugauugaACGCGGCguucCGCGUGCu- -3'
miRNA:   3'- -CGCGCG------------UGUGUCGaaucGUGCAUGcg -5'
22969 3' -52.8 NC_005137.2 + 100137 0.66 0.968175
Target:  5'- -aGCG-GCACAGCUcgccCACGUACGg -3'
miRNA:   3'- cgCGCgUGUGUCGAauc-GUGCAUGCg -5'
22969 3' -52.8 NC_005137.2 + 46444 0.66 0.961423
Target:  5'- -gGCGCACAU-GCUgUGGCACaugcACGCc -3'
miRNA:   3'- cgCGCGUGUGuCGA-AUCGUGca--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 31004 0.66 0.968175
Target:  5'- cCGCGCACGCuGgUcGGCGCcgcUACGUc -3'
miRNA:   3'- cGCGCGUGUGuCgAaUCGUGc--AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 97395 0.66 0.964913
Target:  5'- cCGCGCAaauaaguuUGCAGgUUgGGCACGUACa- -3'
miRNA:   3'- cGCGCGU--------GUGUCgAA-UCGUGCAUGcg -5'
22969 3' -52.8 NC_005137.2 + 61541 0.66 0.956537
Target:  5'- aCGCGCGCGCGauuuuuuucGUUgAGCACGUAaugauaauaauugcCGCc -3'
miRNA:   3'- cGCGCGUGUGU---------CGAaUCGUGCAU--------------GCG- -5'
22969 3' -52.8 NC_005137.2 + 42648 0.66 0.9577
Target:  5'- gGUGgGUACAUGGaCUacuuUGGCGCG-ACGCc -3'
miRNA:   3'- -CGCgCGUGUGUC-GA----AUCGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 47566 0.66 0.961423
Target:  5'- gGCGCGUACuugcCAGUgcacAGCACcUGCGg -3'
miRNA:   3'- -CGCGCGUGu---GUCGaa--UCGUGcAUGCg -5'
22969 3' -52.8 NC_005137.2 + 11219 0.66 0.9577
Target:  5'- uCGCGUAUACAGUUUuuucuGCGCGcACa- -3'
miRNA:   3'- cGCGCGUGUGUCGAAu----CGUGCaUGcg -5'
22969 3' -52.8 NC_005137.2 + 61243 0.66 0.9577
Target:  5'- uGCGCGCaaACGCGGCggaUUAGUAauUGUcgGCGUc -3'
miRNA:   3'- -CGCGCG--UGUGUCG---AAUCGU--GCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 90135 0.66 0.961423
Target:  5'- uGCGacaaaacaaauCGCuauacuuuuCAUAGUUUGGCGCGUgcaACGCg -3'
miRNA:   3'- -CGC-----------GCGu--------GUGUCGAAUCGUGCA---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.