miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 119693 1.15 0.001862
Target:  5'- cGCGCGCACACAGCUUAGCACGUACGCa -3'
miRNA:   3'- -CGCGCGUGUGUCGAAUCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 110865 0.85 0.182022
Target:  5'- uGCGCGCACACcGUUgcGCACGcGCGCa -3'
miRNA:   3'- -CGCGCGUGUGuCGAauCGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 1997 0.81 0.307316
Target:  5'- cCGCGUGCACAGCUcguGCACGcugcgGCGCa -3'
miRNA:   3'- cGCGCGUGUGUCGAau-CGUGCa----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 48316 0.8 0.329822
Target:  5'- uGCGCagcuggucGCGCACGGcCUUggcGGCACGUGCGUa -3'
miRNA:   3'- -CGCG--------CGUGUGUC-GAA---UCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 110445 0.79 0.361682
Target:  5'- aGCGUGCACACcGCggccGGCGCGUACa- -3'
miRNA:   3'- -CGCGCGUGUGuCGaa--UCGUGCAUGcg -5'
22969 3' -52.8 NC_005137.2 + 29040 0.77 0.468347
Target:  5'- aGCGUGCGCGC-GUUUAGUagccaugACGUACGUg -3'
miRNA:   3'- -CGCGCGUGUGuCGAAUCG-------UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 117013 0.77 0.469312
Target:  5'- aUGCGCACACcGCUccaaucCACGUACGCg -3'
miRNA:   3'- cGCGCGUGUGuCGAauc---GUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 74342 0.76 0.507693
Target:  5'- uCGCG-GCACAGCUUGGCcACGUgguagguACGCa -3'
miRNA:   3'- cGCGCgUGUGUCGAAUCG-UGCA-------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 30967 0.76 0.528905
Target:  5'- aCGCGCACACucccaacGUguuGCugGUGCGCg -3'
miRNA:   3'- cGCGCGUGUGu------CGaauCGugCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 30392 0.76 0.528905
Target:  5'- uGUGCGCACGC-GUUUAcCACGUAUGUa -3'
miRNA:   3'- -CGCGCGUGUGuCGAAUcGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 23651 0.76 0.528905
Target:  5'- aCGUGCAaCGCGuGCUUAGCaaaGCGUGCGUc -3'
miRNA:   3'- cGCGCGU-GUGU-CGAAUCG---UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 95333 0.75 0.547342
Target:  5'- cGUGCGUaguGCACGGCgucaaugugcggUGGCAuuCGUGCGCg -3'
miRNA:   3'- -CGCGCG---UGUGUCGa-----------AUCGU--GCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 31396 0.75 0.559746
Target:  5'- aGCGCGCACgacGCGGCcauguucaAGCugGUguGCGCg -3'
miRNA:   3'- -CGCGCGUG---UGUCGaa------UCGugCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 72517 0.75 0.570142
Target:  5'- cGCGUGUACACuAGCgu-GCACGcggagcgGCGCa -3'
miRNA:   3'- -CGCGCGUGUG-UCGaauCGUGCa------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 68838 0.75 0.58687
Target:  5'- uUGCGCACGCuuauuauGCUgucauccgccacGCGCGUGCGCa -3'
miRNA:   3'- cGCGCGUGUGu------CGAau----------CGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 31227 0.75 0.591067
Target:  5'- cGCG-GCACAcCAGCUUGaacauggccGCGuCGUGCGCg -3'
miRNA:   3'- -CGCgCGUGU-GUCGAAU---------CGU-GCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 100137 0.75 0.591067
Target:  5'- gGUGCGUGCGCuGCUggcGCACGaagagGCGCg -3'
miRNA:   3'- -CGCGCGUGUGuCGAau-CGUGCa----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 110969 0.74 0.618449
Target:  5'- uGCGCGUcgGCggGCGGCgucgauugcgaaAGCGCGUACGCu -3'
miRNA:   3'- -CGCGCG--UG--UGUCGaa----------UCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 115899 0.74 0.622672
Target:  5'- gGCGCGCACGuuGCguuGCACcUugGCg -3'
miRNA:   3'- -CGCGCGUGUguCGaauCGUGcAugCG- -5'
22969 3' -52.8 NC_005137.2 + 110676 0.74 0.622672
Target:  5'- gGCGUGCGCGgAGCccaucaagUAucgggucaugcGCGCGUGCGCa -3'
miRNA:   3'- -CGCGCGUGUgUCGa-------AU-----------CGUGCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.