miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 46127 0.72 0.725102
Target:  5'- aCGCGUcaccccaacauuaGC-CAGCUUAGCacgcaagugucggACGUGCGCa -3'
miRNA:   3'- cGCGCG-------------UGuGUCGAAUCG-------------UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 68664 0.73 0.663825
Target:  5'- cGUGCGCACGCgcguGGCggaugacAGCauaauaaGCGUGCGCa -3'
miRNA:   3'- -CGCGCGUGUG----UCGaa-----UCG-------UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 110724 0.73 0.675381
Target:  5'- gGUGUGCGCGCAG---AGCGCuuGUGCGCc -3'
miRNA:   3'- -CGCGCGUGUGUCgaaUCGUG--CAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 112855 0.73 0.675381
Target:  5'- uCGCGCAUcgcuGCGGCUcgguccaagugaUAGCACGcgggcUGCGCg -3'
miRNA:   3'- cGCGCGUG----UGUCGA------------AUCGUGC-----AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 26648 0.73 0.703526
Target:  5'- cGUGCGCGuCGCAGCgcgAacacgacgacgcacGCACGUGCGa -3'
miRNA:   3'- -CGCGCGU-GUGUCGaa-U--------------CGUGCAUGCg -5'
22969 3' -52.8 NC_005137.2 + 104708 0.73 0.706628
Target:  5'- aGCGCGC-CGCcGUUguaCGCGUACGCu -3'
miRNA:   3'- -CGCGCGuGUGuCGAaucGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 31404 0.72 0.716922
Target:  5'- uGCGCGuCACcaaccgugGCAGCU--GCACGUcgACGCc -3'
miRNA:   3'- -CGCGC-GUG--------UGUCGAauCGUGCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 123849 0.72 0.716922
Target:  5'- uGUGaGCGCGCGGCUUA-CACGccGCGCa -3'
miRNA:   3'- -CGCgCGUGUGUCGAAUcGUGCa-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 122724 0.72 0.716922
Target:  5'- cGCGUGCugGgCGuGCUUAGCACGUuagugacccgGCGg -3'
miRNA:   3'- -CGCGCGugU-GU-CGAAUCGUGCA----------UGCg -5'
22969 3' -52.8 NC_005137.2 + 100028 0.74 0.654345
Target:  5'- uGCGCaaGCACGCGGUccgacgcGGCGCGcgGCGCg -3'
miRNA:   3'- -CGCG--CGUGUGUCGaa-----UCGUGCa-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 21846 0.74 0.643795
Target:  5'- aCGCagaaCACugGGCaacuugAGCACGUACGCg -3'
miRNA:   3'- cGCGc---GUGugUCGaa----UCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 2175 0.74 0.643795
Target:  5'- aGCGCGCGCuucaucaAGUUUAguuuGCGCGUuACGCa -3'
miRNA:   3'- -CGCGCGUGug-----UCGAAU----CGUGCA-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 1997 0.81 0.307316
Target:  5'- cCGCGUGCACAGCUcguGCACGcugcgGCGCa -3'
miRNA:   3'- cGCGCGUGUGUCGAau-CGUGCa----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 48316 0.8 0.329822
Target:  5'- uGCGCagcuggucGCGCACGGcCUUggcGGCACGUGCGUa -3'
miRNA:   3'- -CGCG--------CGUGUGUC-GAA---UCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 110445 0.79 0.361682
Target:  5'- aGCGUGCACACcGCggccGGCGCGUACa- -3'
miRNA:   3'- -CGCGCGUGUGuCGaa--UCGUGCAUGcg -5'
22969 3' -52.8 NC_005137.2 + 74342 0.76 0.507693
Target:  5'- uCGCG-GCACAGCUUGGCcACGUgguagguACGCa -3'
miRNA:   3'- cGCGCgUGUGUCGAAUCG-UGCA-------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 30392 0.76 0.528905
Target:  5'- uGUGCGCACGC-GUUUAcCACGUAUGUa -3'
miRNA:   3'- -CGCGCGUGUGuCGAAUcGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 31227 0.75 0.591067
Target:  5'- cGCG-GCACAcCAGCUUGaacauggccGCGuCGUGCGCg -3'
miRNA:   3'- -CGCgCGUGU-GUCGAAU---------CGU-GCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 110676 0.74 0.622672
Target:  5'- gGCGUGCGCGgAGCccaucaagUAucgggucaugcGCGCGUGCGCa -3'
miRNA:   3'- -CGCGCGUGUgUCGa-------AU-----------CGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 105520 0.74 0.633234
Target:  5'- gGCGC-CACACGGCUgcUGGCACcGUuuuUGCa -3'
miRNA:   3'- -CGCGcGUGUGUCGA--AUCGUG-CAu--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.