miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 131032 0.73 0.696266
Target:  5'- gGCGCGUcCGCGGCguacaauucaGGCGCGggcUGCGCg -3'
miRNA:   3'- -CGCGCGuGUGUCGaa--------UCGUGC---AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 129682 0.67 0.945083
Target:  5'- uGCGCGC-CACAauGCUcgccAGCACGUuuCGa -3'
miRNA:   3'- -CGCGCGuGUGU--CGAa---UCGUGCAu-GCg -5'
22969 3' -52.8 NC_005137.2 + 124551 0.66 0.970921
Target:  5'- uGCGCGCugaaacgACGCGcGCgcAGCAUG-ACGUu -3'
miRNA:   3'- -CGCGCG-------UGUGU-CGaaUCGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 123849 0.72 0.716922
Target:  5'- uGUGaGCGCGCGGCUUA-CACGccGCGCa -3'
miRNA:   3'- -CGCgCGUGUGUCGAAUcGUGCa-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 123267 0.66 0.968175
Target:  5'- aCGUGCACAcCGGCgcAGCuccauUGCGCa -3'
miRNA:   3'- cGCGCGUGU-GUCGaaUCGugc--AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 123069 0.67 0.953329
Target:  5'- cGCG-GCGCGCAGCcUUGGUgagguCGUugacugggcaaauGCGCa -3'
miRNA:   3'- -CGCgCGUGUGUCG-AAUCGu----GCA-------------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 122724 0.72 0.716922
Target:  5'- cGCGUGCugGgCGuGCUUAGCACGUuagugacccgGCGg -3'
miRNA:   3'- -CGCGCGugU-GU-CGAAUCGUGCA----------UGCg -5'
22969 3' -52.8 NC_005137.2 + 122451 0.66 0.968175
Target:  5'- uCGCGCucucaacaACACgGGCggcAGCuauuACGUACGCg -3'
miRNA:   3'- cGCGCG--------UGUG-UCGaa-UCG----UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 119869 0.69 0.886695
Target:  5'- uGgGCGCuGCGCGGCggGaUGCGUACGUg -3'
miRNA:   3'- -CgCGCG-UGUGUCGaaUcGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 119693 1.15 0.001862
Target:  5'- cGCGCGCACACAGCUUAGCACGUACGCa -3'
miRNA:   3'- -CGCGCGUGUGUCGAAUCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 119575 0.7 0.856496
Target:  5'- -aGCGaCGCAC-GCUgAGCACGUGC-Ca -3'
miRNA:   3'- cgCGC-GUGUGuCGAaUCGUGCAUGcG- -5'
22969 3' -52.8 NC_005137.2 + 118765 0.69 0.885273
Target:  5'- gGUGCGCcuuuuucguuuggACGCAGCUaaaguuuUGGCAa-UGCGCa -3'
miRNA:   3'- -CGCGCG-------------UGUGUCGA-------AUCGUgcAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 117574 0.7 0.840075
Target:  5'- aGUGCGcCGCcgguGCGGCUgacgGGCGacgUGUACGCu -3'
miRNA:   3'- -CGCGC-GUG----UGUCGAa---UCGU---GCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 117013 0.77 0.469312
Target:  5'- aUGCGCACACcGCUccaaucCACGUACGCg -3'
miRNA:   3'- cGCGCGUGUGuCGAauc---GUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 116852 0.7 0.831559
Target:  5'- aCGCGUACguggauuggaGCGGUgugcGCAUGUGCGCu -3'
miRNA:   3'- cGCGCGUG----------UGUCGaau-CGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 116840 0.66 0.9577
Target:  5'- -aGCGUACACgugcgugccgGGCUUuauGUACaUGCGCg -3'
miRNA:   3'- cgCGCGUGUG----------UCGAAu--CGUGcAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 116673 0.67 0.940382
Target:  5'- cGCGCauGUACAUaaAGCccGGCACGcACGUg -3'
miRNA:   3'- -CGCG--CGUGUG--UCGaaUCGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 115899 0.74 0.622672
Target:  5'- gGCGCGCACGuuGCguuGCACcUugGCg -3'
miRNA:   3'- -CGCGCGUGUguCGaauCGUGcAugCG- -5'
22969 3' -52.8 NC_005137.2 + 112855 0.73 0.675381
Target:  5'- uCGCGCAUcgcuGCGGCUcgguccaagugaUAGCACGcgggcUGCGCg -3'
miRNA:   3'- cGCGCGUG----UGUCGA------------AUCGUGC-----AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 112401 0.66 0.964233
Target:  5'- cGCGauCGCGCACGGCgcgccauuguGCAaGUACGg -3'
miRNA:   3'- -CGC--GCGUGUGUCGaau-------CGUgCAUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.