Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22969 | 3' | -52.8 | NC_005137.2 | + | 47566 | 0.66 | 0.961423 |
Target: 5'- gGCGCGUACuugcCAGUgcacAGCACcUGCGg -3' miRNA: 3'- -CGCGCGUGu---GUCGaa--UCGUGcAUGCg -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 46444 | 0.66 | 0.961423 |
Target: 5'- -gGCGCACAU-GCUgUGGCACaugcACGCc -3' miRNA: 3'- cgCGCGUGUGuCGA-AUCGUGca--UGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 90135 | 0.66 | 0.961423 |
Target: 5'- uGCGacaaaacaaauCGCuauacuuuuCAUAGUUUGGCGCGUgcaACGCg -3' miRNA: 3'- -CGC-----------GCGu--------GUGUCGAAUCGUGCA---UGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 112227 | 0.66 | 0.961423 |
Target: 5'- uGCGCGCagugaugauugaACGCGGCguucCGCGUGCu- -3' miRNA: 3'- -CGCGCG------------UGUGUCGaaucGUGCAUGcg -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 79847 | 0.66 | 0.961423 |
Target: 5'- aGUGCGCcaaguaACGCAGCggGGU-CGUcCGCc -3' miRNA: 3'- -CGCGCG------UGUGUCGaaUCGuGCAuGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 99386 | 0.66 | 0.959962 |
Target: 5'- gGCGCGCGCccaaaacaaucauACaAGCUgaUagauuuguacaagcGGCACGUGgGCg -3' miRNA: 3'- -CGCGCGUG-------------UG-UCGA--A--------------UCGUGCAUgCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 78751 | 0.66 | 0.959962 |
Target: 5'- gGCGCGCGuuugacguucUACGGUggcaaaccugugcUGGCACGguuugACGCu -3' miRNA: 3'- -CGCGCGU----------GUGUCGa------------AUCGUGCa----UGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 116840 | 0.66 | 0.9577 |
Target: 5'- -aGCGUACACgugcgugccgGGCUUuauGUACaUGCGCg -3' miRNA: 3'- cgCGCGUGUG----------UCGAAu--CGUGcAUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 42648 | 0.66 | 0.9577 |
Target: 5'- gGUGgGUACAUGGaCUacuuUGGCGCG-ACGCc -3' miRNA: 3'- -CGCgCGUGUGUC-GA----AUCGUGCaUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 45451 | 0.66 | 0.9577 |
Target: 5'- aGCGgGCgGCGCAGCa---CGCGcACGCg -3' miRNA: 3'- -CGCgCG-UGUGUCGaaucGUGCaUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 8051 | 0.66 | 0.9577 |
Target: 5'- -gGUGCugACGGCguuccugcucGGCcCGUGCGUg -3' miRNA: 3'- cgCGCGugUGUCGaa--------UCGuGCAUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 11219 | 0.66 | 0.9577 |
Target: 5'- uCGCGUAUACAGUUUuuucuGCGCGcACa- -3' miRNA: 3'- cGCGCGUGUGUCGAAu----CGUGCaUGcg -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 23488 | 0.66 | 0.9577 |
Target: 5'- aUGaCGCACGCuuuGCUaAGCACGcguUGCa -3' miRNA: 3'- cGC-GCGUGUGu--CGAaUCGUGCau-GCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 61243 | 0.66 | 0.9577 |
Target: 5'- uGCGCGCaaACGCGGCggaUUAGUAauUGUcgGCGUc -3' miRNA: 3'- -CGCGCG--UGUGUCG---AAUCGU--GCA--UGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 75972 | 0.66 | 0.9577 |
Target: 5'- cGCG-GCGCGC-GUUgguGCACG-GCGCa -3' miRNA: 3'- -CGCgCGUGUGuCGAau-CGUGCaUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 78276 | 0.66 | 0.9577 |
Target: 5'- uUGCGUucuuUACuaauucGCUUacguugGGCACGUACGCg -3' miRNA: 3'- cGCGCGu---GUGu-----CGAA------UCGUGCAUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 61541 | 0.66 | 0.956537 |
Target: 5'- aCGCGCGCGCGauuuuuuucGUUgAGCACGUAaugauaauaauugcCGCc -3' miRNA: 3'- cGCGCGUGUGU---------CGAaUCGUGCAU--------------GCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 93789 | 0.67 | 0.953739 |
Target: 5'- uCGuCGCACAaacauGCgugAGCACGUACa- -3' miRNA: 3'- cGC-GCGUGUgu---CGaa-UCGUGCAUGcg -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 97393 | 0.67 | 0.953739 |
Target: 5'- uUGUGgACAaacCGGCUgagAGCAUGcUGCGCg -3' miRNA: 3'- cGCGCgUGU---GUCGAa--UCGUGC-AUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 123069 | 0.67 | 0.953329 |
Target: 5'- cGCG-GCGCGCAGCcUUGGUgagguCGUugacugggcaaauGCGCa -3' miRNA: 3'- -CGCgCGUGUGUCG-AAUCGu----GCA-------------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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