miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 90135 0.66 0.961423
Target:  5'- uGCGacaaaacaaauCGCuauacuuuuCAUAGUUUGGCGCGUgcaACGCg -3'
miRNA:   3'- -CGC-----------GCGu--------GUGUCGAAUCGUGCA---UGCG- -5'
22969 3' -52.8 NC_005137.2 + 112227 0.66 0.961423
Target:  5'- uGCGCGCagugaugauugaACGCGGCguucCGCGUGCu- -3'
miRNA:   3'- -CGCGCG------------UGUGUCGaaucGUGCAUGcg -5'
22969 3' -52.8 NC_005137.2 + 79847 0.66 0.961423
Target:  5'- aGUGCGCcaaguaACGCAGCggGGU-CGUcCGCc -3'
miRNA:   3'- -CGCGCG------UGUGUCGaaUCGuGCAuGCG- -5'
22969 3' -52.8 NC_005137.2 + 47566 0.66 0.961423
Target:  5'- gGCGCGUACuugcCAGUgcacAGCACcUGCGg -3'
miRNA:   3'- -CGCGCGUGu---GUCGaa--UCGUGcAUGCg -5'
22969 3' -52.8 NC_005137.2 + 46444 0.66 0.961423
Target:  5'- -gGCGCACAU-GCUgUGGCACaugcACGCc -3'
miRNA:   3'- cgCGCGUGUGuCGA-AUCGUGca--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 99386 0.66 0.959962
Target:  5'- gGCGCGCGCccaaaacaaucauACaAGCUgaUagauuuguacaagcGGCACGUGgGCg -3'
miRNA:   3'- -CGCGCGUG-------------UG-UCGA--A--------------UCGUGCAUgCG- -5'
22969 3' -52.8 NC_005137.2 + 78751 0.66 0.959962
Target:  5'- gGCGCGCGuuugacguucUACGGUggcaaaccugugcUGGCACGguuugACGCu -3'
miRNA:   3'- -CGCGCGU----------GUGUCGa------------AUCGUGCa----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 61243 0.66 0.9577
Target:  5'- uGCGCGCaaACGCGGCggaUUAGUAauUGUcgGCGUc -3'
miRNA:   3'- -CGCGCG--UGUGUCG---AAUCGU--GCA--UGCG- -5'
22969 3' -52.8 NC_005137.2 + 23488 0.66 0.9577
Target:  5'- aUGaCGCACGCuuuGCUaAGCACGcguUGCa -3'
miRNA:   3'- cGC-GCGUGUGu--CGAaUCGUGCau-GCG- -5'
22969 3' -52.8 NC_005137.2 + 11219 0.66 0.9577
Target:  5'- uCGCGUAUACAGUUUuuucuGCGCGcACa- -3'
miRNA:   3'- cGCGCGUGUGUCGAAu----CGUGCaUGcg -5'
22969 3' -52.8 NC_005137.2 + 8051 0.66 0.9577
Target:  5'- -gGUGCugACGGCguuccugcucGGCcCGUGCGUg -3'
miRNA:   3'- cgCGCGugUGUCGaa--------UCGuGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 45451 0.66 0.9577
Target:  5'- aGCGgGCgGCGCAGCa---CGCGcACGCg -3'
miRNA:   3'- -CGCgCG-UGUGUCGaaucGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 42648 0.66 0.9577
Target:  5'- gGUGgGUACAUGGaCUacuuUGGCGCG-ACGCc -3'
miRNA:   3'- -CGCgCGUGUGUC-GA----AUCGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 75972 0.66 0.9577
Target:  5'- cGCG-GCGCGC-GUUgguGCACG-GCGCa -3'
miRNA:   3'- -CGCgCGUGUGuCGAau-CGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 116840 0.66 0.9577
Target:  5'- -aGCGUACACgugcgugccgGGCUUuauGUACaUGCGCg -3'
miRNA:   3'- cgCGCGUGUG----------UCGAAu--CGUGcAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 78276 0.66 0.9577
Target:  5'- uUGCGUucuuUACuaauucGCUUacguugGGCACGUACGCg -3'
miRNA:   3'- cGCGCGu---GUGu-----CGAA------UCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 61541 0.66 0.956537
Target:  5'- aCGCGCGCGCGauuuuuuucGUUgAGCACGUAaugauaauaauugcCGCc -3'
miRNA:   3'- cGCGCGUGUGU---------CGAaUCGUGCAU--------------GCG- -5'
22969 3' -52.8 NC_005137.2 + 93789 0.67 0.953739
Target:  5'- uCGuCGCACAaacauGCgugAGCACGUACa- -3'
miRNA:   3'- cGC-GCGUGUgu---CGaa-UCGUGCAUGcg -5'
22969 3' -52.8 NC_005137.2 + 97393 0.67 0.953739
Target:  5'- uUGUGgACAaacCGGCUgagAGCAUGcUGCGCg -3'
miRNA:   3'- cGCGCgUGU---GUCGAa--UCGUGC-AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 123069 0.67 0.953329
Target:  5'- cGCG-GCGCGCAGCcUUGGUgagguCGUugacugggcaaauGCGCa -3'
miRNA:   3'- -CGCgCGUGUGUCG-AAUCGu----GCA-------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.