miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 98164 0.66 0.971215
Target:  5'- aCGUGCACGCuGGCcacUUGGCGg--GCGCa -3'
miRNA:   3'- cGCGCGUGUG-UCG---AAUCGUgcaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 61990 0.67 0.930222
Target:  5'- -gGCGCAgACAcGCUcGGCAaagACGCg -3'
miRNA:   3'- cgCGCGUgUGU-CGAaUCGUgcaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 99692 0.67 0.934919
Target:  5'- aGCGCGCugACGCAGUUaaaCGCGgaaaacuUGCGCg -3'
miRNA:   3'- -CGCGCG--UGUGUCGAaucGUGC-------AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 110703 0.67 0.945083
Target:  5'- cGgGCGCACAuCGGCg-GGCACcuccaACGCc -3'
miRNA:   3'- -CgCGCGUGU-GUCGaaUCGUGca---UGCG- -5'
22969 3' -52.8 NC_005137.2 + 79847 0.66 0.961423
Target:  5'- aGUGCGCcaaguaACGCAGCggGGU-CGUcCGCc -3'
miRNA:   3'- -CGCGCG------UGUGUCGaaUCGuGCAuGCG- -5'
22969 3' -52.8 NC_005137.2 + 2160 0.69 0.893658
Target:  5'- cUGCGC-CGCAGCgu-GCACGagcugugcACGCg -3'
miRNA:   3'- cGCGCGuGUGUCGaauCGUGCa-------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 57856 0.68 0.919044
Target:  5'- aCGCaGCAUuuuuuGCAGCgcggagAGCAUGUACcGCa -3'
miRNA:   3'- cGCG-CGUG-----UGUCGaa----UCGUGCAUG-CG- -5'
22969 3' -52.8 NC_005137.2 + 44425 0.66 0.968175
Target:  5'- aGCGCGCaACGCu-CUUgaGGaacguUACGUGCGCg -3'
miRNA:   3'- -CGCGCG-UGUGucGAA--UC-----GUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 21131 0.67 0.940382
Target:  5'- uGCGUGCaaGCGCGGCaaaacGCGCGc-CGCa -3'
miRNA:   3'- -CGCGCG--UGUGUCGaau--CGUGCauGCG- -5'
22969 3' -52.8 NC_005137.2 + 98307 0.67 0.940382
Target:  5'- cCGCGCGC-CGGCUauaaaaGGCGCGgcCGa -3'
miRNA:   3'- cGCGCGUGuGUCGAa-----UCGUGCauGCg -5'
22969 3' -52.8 NC_005137.2 + 123267 0.66 0.968175
Target:  5'- aCGUGCACAcCGGCgcAGCuccauUGCGCa -3'
miRNA:   3'- cGCGCGUGU-GUCGaaUCGugc--AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 100172 0.66 0.968175
Target:  5'- cGCGUGCuuGCGCAccGCUggAGUugGUG-GCg -3'
miRNA:   3'- -CGCGCG--UGUGU--CGAa-UCGugCAUgCG- -5'
22969 3' -52.8 NC_005137.2 + 55577 0.69 0.893658
Target:  5'- -gGCGgACGCGGgc-GGCGcCGUGCGCg -3'
miRNA:   3'- cgCGCgUGUGUCgaaUCGU-GCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 30533 0.69 0.893658
Target:  5'- cGCGUGCGCACA----GGCACGcauUACGg -3'
miRNA:   3'- -CGCGCGUGUGUcgaaUCGUGC---AUGCg -5'
22969 3' -52.8 NC_005137.2 + 45254 0.67 0.935428
Target:  5'- cGCGCGCcCGCgaguGGCagAGCAaGUcGCGCg -3'
miRNA:   3'- -CGCGCGuGUG----UCGaaUCGUgCA-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 78276 0.66 0.9577
Target:  5'- uUGCGUucuuUACuaauucGCUUacguugGGCACGUACGCg -3'
miRNA:   3'- cGCGCGu---GUGu-----CGAA------UCGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 78751 0.66 0.959962
Target:  5'- gGCGCGCGuuugacguucUACGGUggcaaaccugugcUGGCACGguuugACGCu -3'
miRNA:   3'- -CGCGCGU----------GUGUCGa------------AUCGUGCa----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 87237 0.66 0.970326
Target:  5'- cCGCGUGCACGGCguucauGCcuucggcaauuucaACGgGCGCg -3'
miRNA:   3'- cGCGCGUGUGUCGaau---CG--------------UGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 129682 0.67 0.945083
Target:  5'- uGCGCGC-CACAauGCUcgccAGCACGUuuCGa -3'
miRNA:   3'- -CGCGCGuGUGU--CGAa---UCGUGCAu-GCg -5'
22969 3' -52.8 NC_005137.2 + 84709 0.67 0.940382
Target:  5'- aCGCGCcgacguguuGCACAGCaucauUAUGUACGCg -3'
miRNA:   3'- cGCGCG---------UGUGUCGaauc-GUGCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.