Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22970 | 5' | -51.6 | NC_005137.2 | + | 56745 | 0.67 | 0.963591 |
Target: 5'- cGAGCACGUCgcccgucgcgucgGGUcccAUAAcGGCGCAAAa -3' miRNA: 3'- -CUCGUGCAGa------------CCG---UGUU-UCGCGUUUc -5' |
|||||||
22970 | 5' | -51.6 | NC_005137.2 | + | 31363 | 0.66 | 0.968322 |
Target: 5'- -uGCGCGaccgCUGGUACAAGG-GCGAc- -3' miRNA: 3'- cuCGUGCa---GACCGUGUUUCgCGUUuc -5' |
|||||||
22970 | 5' | -51.6 | NC_005137.2 | + | 62925 | 0.66 | 0.968322 |
Target: 5'- cGGGCGCuuccauUUUGGCACAuuauuuuGCGCAAAu -3' miRNA: 3'- -CUCGUGc-----AGACCGUGUuu-----CGCGUUUc -5' |
|||||||
22970 | 5' | -51.6 | NC_005137.2 | + | 100133 | 0.66 | 0.971422 |
Target: 5'- -cGUGCGcugCUGGCGCAcgaagAGGCGCGcGGc -3' miRNA: 3'- cuCGUGCa--GACCGUGU-----UUCGCGUuUC- -5' |
|||||||
22970 | 5' | -51.6 | NC_005137.2 | + | 131033 | 0.66 | 0.974297 |
Target: 5'- cGGCGCGUCcgcGGCguACAAuucaGGCGCGGGc -3' miRNA: 3'- cUCGUGCAGa--CCG--UGUU----UCGCGUUUc -5' |
|||||||
22970 | 5' | -51.6 | NC_005137.2 | + | 122539 | 0.66 | 0.974297 |
Target: 5'- cGGGCACGUUaucGGCGCGucgcaauuGCGUAAGc -3' miRNA: 3'- -CUCGUGCAGa--CCGUGUuu------CGCGUUUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home