miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22971 5' -59.2 NC_005137.2 + 49852 0.74 0.29572
Target:  5'- -aCCGGCCAAgcGGCGCGUaguuaccgCCGCGCgCCa -3'
miRNA:   3'- gaGGCCGGUUa-UCGUGCG--------GGUGCG-GG- -5'
22971 5' -59.2 NC_005137.2 + 50074 0.66 0.758821
Target:  5'- -aUUGGCCAuugacGCGCGCCucCACGgCCg -3'
miRNA:   3'- gaGGCCGGUuau--CGUGCGG--GUGCgGG- -5'
22971 5' -59.2 NC_005137.2 + 51851 0.67 0.670708
Target:  5'- gUCUuGuCCAuguGCACGCCUuuuACGCCCg -3'
miRNA:   3'- gAGGcC-GGUuauCGUGCGGG---UGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 55416 0.67 0.670708
Target:  5'- gCUCCacGCgCAc-GGCGcCGCCCGCGUCCg -3'
miRNA:   3'- -GAGGc-CG-GUuaUCGU-GCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 64154 0.71 0.454184
Target:  5'- gUCCGGUCGAccuUGGCACaGCUCAUuaacccgacauugGCCCa -3'
miRNA:   3'- gAGGCCGGUU---AUCGUG-CGGGUG-------------CGGG- -5'
22971 5' -59.2 NC_005137.2 + 73460 0.66 0.720368
Target:  5'- --aCGGCCAuaguUAGUggGCGCCaccaaacCGCCCg -3'
miRNA:   3'- gagGCCGGUu---AUCG--UGCGGgu-----GCGGG- -5'
22971 5' -59.2 NC_005137.2 + 73954 0.73 0.343866
Target:  5'- uUuuGGCCAaccugcagcaggccGUGGCgaacgaggcuACGCCCGCGCCa -3'
miRNA:   3'- gAggCCGGU--------------UAUCG----------UGCGGGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 78079 0.66 0.758821
Target:  5'- -aCCGGCCAcuuguuucauucGUuGUACGCgUACguGCCCa -3'
miRNA:   3'- gaGGCCGGU------------UAuCGUGCGgGUG--CGGG- -5'
22971 5' -59.2 NC_005137.2 + 83116 0.66 0.768184
Target:  5'- -----aUCAAUGGCACGCCCaACGCUa -3'
miRNA:   3'- gaggccGGUUAUCGUGCGGG-UGCGGg -5'
22971 5' -59.2 NC_005137.2 + 87217 0.7 0.482771
Target:  5'- cCUUCGGCaauuucaAcgGGCGCGUCCACcGCCa -3'
miRNA:   3'- -GAGGCCGg------UuaUCGUGCGGGUG-CGGg -5'
22971 5' -59.2 NC_005137.2 + 88636 0.68 0.65057
Target:  5'- uUCCGuCCAAUuGCGCGacggugaaCCGCGCCa -3'
miRNA:   3'- gAGGCcGGUUAuCGUGCg-------GGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 90384 0.78 0.17877
Target:  5'- aUCgGGCCAAgAGCGCGUCCACGUUg -3'
miRNA:   3'- gAGgCCGGUUaUCGUGCGGGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 91160 0.73 0.361645
Target:  5'- -aCCGuuCAAUgAGCGCGCCCGCGUCg -3'
miRNA:   3'- gaGGCcgGUUA-UCGUGCGGGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 93464 0.67 0.710548
Target:  5'- -aCgGGCaCGGU-GCGCGCCaGCGCCg -3'
miRNA:   3'- gaGgCCG-GUUAuCGUGCGGgUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 93628 0.69 0.580037
Target:  5'- uUUCGGCaaacggcgcUGGCGCGCaCCGUGCCCg -3'
miRNA:   3'- gAGGCCGguu------AUCGUGCG-GGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 93670 0.67 0.710548
Target:  5'- -gCCGGCCGcGUAGaUGCGCaaCAgGCCCa -3'
miRNA:   3'- gaGGCCGGU-UAUC-GUGCGg-GUgCGGG- -5'
22971 5' -59.2 NC_005137.2 + 95528 0.69 0.570052
Target:  5'- uUUCGGCa---AGCA-GCCaCACGCCCg -3'
miRNA:   3'- gAGGCCGguuaUCGUgCGG-GUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 95656 0.67 0.680735
Target:  5'- -aCCGGCCAcgucAGCgauGCGCCCgugcgGCGCgCa -3'
miRNA:   3'- gaGGCCGGUua--UCG---UGCGGG-----UGCGgG- -5'
22971 5' -59.2 NC_005137.2 + 96046 0.67 0.690723
Target:  5'- --aCGGUCAcc-GCgACGCaCCAUGCCCg -3'
miRNA:   3'- gagGCCGGUuauCG-UGCG-GGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 98156 0.74 0.309522
Target:  5'- -gCUGGCCAcuUGGCgggcgcacccACGCCgCGCGCCCg -3'
miRNA:   3'- gaGGCCGGUu-AUCG----------UGCGG-GUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.