miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22971 5' -59.2 NC_005137.2 + 1136 0.67 0.680735
Target:  5'- -aUCGGCC--UGGUuuuccaaGCUCGCGCCCg -3'
miRNA:   3'- gaGGCCGGuuAUCGug-----CGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 2439 0.69 0.540375
Target:  5'- --gUGGCCGA---CGUGCCCGCGCCCg -3'
miRNA:   3'- gagGCCGGUUaucGUGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 2483 0.66 0.758821
Target:  5'- --aCGGCCAu--GCACGCCUccacgaGCGCg- -3'
miRNA:   3'- gagGCCGGUuauCGUGCGGG------UGCGgg -5'
22971 5' -59.2 NC_005137.2 + 7468 0.67 0.670708
Target:  5'- uUgUGGUgCAAUAGC-CGCCCACcgcaagcuuguGCCCg -3'
miRNA:   3'- gAgGCCG-GUUAUCGuGCGGGUG-----------CGGG- -5'
22971 5' -59.2 NC_005137.2 + 13038 0.73 0.361645
Target:  5'- gUUCGGCCAccuGUuuCGcCCCGCGCCCg -3'
miRNA:   3'- gAGGCCGGUuauCGu-GC-GGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 13869 0.68 0.65057
Target:  5'- -gUCGGCaaaaAAUAGCaacaACGCggUCGCGCCCa -3'
miRNA:   3'- gaGGCCGg---UUAUCG----UGCG--GGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 14136 0.68 0.65057
Target:  5'- gUCgGGCCAAUAGCGCacuauuaaaucGCaCACGUCg -3'
miRNA:   3'- gAGgCCGGUUAUCGUG-----------CGgGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 21380 0.66 0.730114
Target:  5'- --gCGGCCcgcAGCGuCGCCCACGUa- -3'
miRNA:   3'- gagGCCGGuuaUCGU-GCGGGUGCGgg -5'
22971 5' -59.2 NC_005137.2 + 22402 0.73 0.361645
Target:  5'- -aCCGGCaacAUGGCGCGCCUgACGCUg -3'
miRNA:   3'- gaGGCCGgu-UAUCGUGCGGG-UGCGGg -5'
22971 5' -59.2 NC_005137.2 + 27399 0.74 0.294366
Target:  5'- gUCCGGCCAAaaguagcggccgcUgcagcgcuguaacAGCugGCCCACGCgCu -3'
miRNA:   3'- gAGGCCGGUU-------------A-------------UCGugCGGGUGCGgG- -5'
22971 5' -59.2 NC_005137.2 + 28210 0.7 0.520881
Target:  5'- gUCUGGCgCAucccAGCGCGCgUCGCGCCa -3'
miRNA:   3'- gAGGCCG-GUua--UCGUGCG-GGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 29356 0.67 0.690723
Target:  5'- uUuuGGCCAAUuuuuaAGCAUaaCCugGCCUg -3'
miRNA:   3'- gAggCCGGUUA-----UCGUGcgGGugCGGG- -5'
22971 5' -59.2 NC_005137.2 + 29496 0.68 0.630375
Target:  5'- -aUUGGCCAAaauugcuuuUGGCGCGCUuCACGCUa -3'
miRNA:   3'- gaGGCCGGUU---------AUCGUGCGG-GUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 41332 0.7 0.495964
Target:  5'- uUCCGuuGUCA--GGCACGCCUaccacaccgccgucuGCGCCCa -3'
miRNA:   3'- gAGGC--CGGUuaUCGUGCGGG---------------UGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 42367 0.68 0.610185
Target:  5'- -gCCGuuGCCAcucguuGUAGCGCGCgUCGCGUCCc -3'
miRNA:   3'- gaGGC--CGGU------UAUCGUGCG-GGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 42505 0.73 0.353837
Target:  5'- -aCCGGCgGuAUAGCGCGCUaaucgcuCGCCCg -3'
miRNA:   3'- gaGGCCGgU-UAUCGUGCGGgu-----GCGGG- -5'
22971 5' -59.2 NC_005137.2 + 43813 0.76 0.22832
Target:  5'- --aCGGCaCGAgcAGC-CGCCCGCGCCCg -3'
miRNA:   3'- gagGCCG-GUUa-UCGuGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 44655 0.69 0.570052
Target:  5'- --aCGGCCGAUGGCAagcuCGaCCCgACGCUa -3'
miRNA:   3'- gagGCCGGUUAUCGU----GC-GGG-UGCGGg -5'
22971 5' -59.2 NC_005137.2 + 45014 0.66 0.765387
Target:  5'- -cUCGGCC---GGCGCGgCCACaaauaucuuuacggGCCCg -3'
miRNA:   3'- gaGGCCGGuuaUCGUGCgGGUG--------------CGGG- -5'
22971 5' -59.2 NC_005137.2 + 48389 0.68 0.620276
Target:  5'- -aUCGGCgCAAUuGUAaaaGCCCuCGCCCa -3'
miRNA:   3'- gaGGCCG-GUUAuCGUg--CGGGuGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.