miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22971 5' -59.2 NC_005137.2 + 122367 1.12 0.000789
Target:  5'- cCUCCGGCCAAUAGCACGCCCACGCCCg -3'
miRNA:   3'- -GAGGCCGGUUAUCGUGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 90384 0.78 0.17877
Target:  5'- aUCgGGCCAAgAGCGCGUCCACGUUg -3'
miRNA:   3'- gAGgCCGGUUaUCGUGCGGGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 110595 0.77 0.217558
Target:  5'- -gCCGGCCGcgGUGuGCACGCUCaccgucGCGCCCg -3'
miRNA:   3'- gaGGCCGGU--UAU-CGUGCGGG------UGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 43813 0.76 0.22832
Target:  5'- --aCGGCaCGAgcAGC-CGCCCGCGCCCg -3'
miRNA:   3'- gagGCCG-GUUa-UCGuGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 27399 0.74 0.294366
Target:  5'- gUCCGGCCAAaaguagcggccgcUgcagcgcuguaacAGCugGCCCACGCgCu -3'
miRNA:   3'- gAGGCCGGUU-------------A-------------UCGugCGGGUGCGgG- -5'
22971 5' -59.2 NC_005137.2 + 49852 0.74 0.29572
Target:  5'- -aCCGGCCAAgcGGCGCGUaguuaccgCCGCGCgCCa -3'
miRNA:   3'- gaGGCCGGUUa-UCGUGCG--------GGUGCG-GG- -5'
22971 5' -59.2 NC_005137.2 + 98156 0.74 0.309522
Target:  5'- -gCUGGCCAcuUGGCgggcgcacccACGCCgCGCGCCCg -3'
miRNA:   3'- gaGGCCGGUu-AUCG----------UGCGG-GUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 128616 0.73 0.338581
Target:  5'- -gCCGGUUAAuaguuuguagguUAGCACGCCCACGgCg -3'
miRNA:   3'- gaGGCCGGUU------------AUCGUGCGGGUGCgGg -5'
22971 5' -59.2 NC_005137.2 + 73954 0.73 0.343866
Target:  5'- uUuuGGCCAaccugcagcaggccGUGGCgaacgaggcuACGCCCGCGCCa -3'
miRNA:   3'- gAggCCGGU--------------UAUCG----------UGCGGGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 42505 0.73 0.353837
Target:  5'- -aCCGGCgGuAUAGCGCGCUaaucgcuCGCCCg -3'
miRNA:   3'- gaGGCCGgU-UAUCGUGCGGgu-----GCGGG- -5'
22971 5' -59.2 NC_005137.2 + 13038 0.73 0.361645
Target:  5'- gUUCGGCCAccuGUuuCGcCCCGCGCCCg -3'
miRNA:   3'- gAGGCCGGUuauCGu-GC-GGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 22402 0.73 0.361645
Target:  5'- -aCCGGCaacAUGGCGCGCCUgACGCUg -3'
miRNA:   3'- gaGGCCGgu-UAUCGUGCGGG-UGCGGg -5'
22971 5' -59.2 NC_005137.2 + 91160 0.73 0.361645
Target:  5'- -aCCGuuCAAUgAGCGCGCCCGCGUCg -3'
miRNA:   3'- gaGGCcgGUUA-UCGUGCGGGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 64154 0.71 0.454184
Target:  5'- gUCCGGUCGAccuUGGCACaGCUCAUuaacccgacauugGCCCa -3'
miRNA:   3'- gAGGCCGGUU---AUCGUG-CGGGUG-------------CGGG- -5'
22971 5' -59.2 NC_005137.2 + 87217 0.7 0.482771
Target:  5'- cCUUCGGCaauuucaAcgGGCGCGUCCACcGCCa -3'
miRNA:   3'- -GAGGCCGg------UuaUCGUGCGGGUG-CGGg -5'
22971 5' -59.2 NC_005137.2 + 41332 0.7 0.495964
Target:  5'- uUCCGuuGUCA--GGCACGCCUaccacaccgccgucuGCGCCCa -3'
miRNA:   3'- gAGGC--CGGUuaUCGUGCGGG---------------UGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 28210 0.7 0.520881
Target:  5'- gUCUGGCgCAucccAGCGCGCgUCGCGCCa -3'
miRNA:   3'- gAGGCCG-GUua--UCGUGCG-GGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 2439 0.69 0.540375
Target:  5'- --gUGGCCGA---CGUGCCCGCGCCCg -3'
miRNA:   3'- gagGCCGGUUaucGUGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 95528 0.69 0.570052
Target:  5'- uUUCGGCa---AGCA-GCCaCACGCCCg -3'
miRNA:   3'- gAGGCCGguuaUCGUgCGG-GUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 104892 0.69 0.570052
Target:  5'- -aCCcGUCGAUAGCugGgCCCAgGCCa -3'
miRNA:   3'- gaGGcCGGUUAUCGugC-GGGUgCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.