miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22971 5' -59.2 NC_005137.2 + 93464 0.67 0.710548
Target:  5'- -aCgGGCaCGGU-GCGCGCCaGCGCCg -3'
miRNA:   3'- gaGgCCG-GUUAuCGUGCGGgUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 7468 0.67 0.670708
Target:  5'- uUgUGGUgCAAUAGC-CGCCCACcgcaagcuuguGCCCg -3'
miRNA:   3'- gAgGCCG-GUUAUCGuGCGGGUG-----------CGGG- -5'
22971 5' -59.2 NC_005137.2 + 51851 0.67 0.670708
Target:  5'- gUCUuGuCCAuguGCACGCCUuuuACGCCCg -3'
miRNA:   3'- gAGGcC-GGUuauCGUGCGGG---UGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 55416 0.67 0.670708
Target:  5'- gCUCCacGCgCAc-GGCGcCGCCCGCGUCCg -3'
miRNA:   3'- -GAGGc-CG-GUuaUCGU-GCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 99961 0.67 0.670708
Target:  5'- --aCGGCCGcgGccGCGCGCCUcuucguGCGCCa -3'
miRNA:   3'- gagGCCGGUuaU--CGUGCGGG------UGCGGg -5'
22971 5' -59.2 NC_005137.2 + 1136 0.67 0.680735
Target:  5'- -aUCGGCC--UGGUuuuccaaGCUCGCGCCCg -3'
miRNA:   3'- gaGGCCGGuuAUCGug-----CGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 29356 0.67 0.690723
Target:  5'- uUuuGGCCAAUuuuuaAGCAUaaCCugGCCUg -3'
miRNA:   3'- gAggCCGGUUA-----UCGUGcgGGugCGGG- -5'
22971 5' -59.2 NC_005137.2 + 127518 0.67 0.700664
Target:  5'- uCUUCaaaGCaGAU-GCGCGCCCAUGCCUg -3'
miRNA:   3'- -GAGGc--CGgUUAuCGUGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 112681 0.67 0.704625
Target:  5'- gUCCgGGUCGggacgcacguuaaacGcgGGCACGUcguCCACGCCCa -3'
miRNA:   3'- gAGG-CCGGU---------------Ua-UCGUGCG---GGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 116294 0.67 0.66065
Target:  5'- --aCGGCCAGcacGCACGCCaaAUGUCCg -3'
miRNA:   3'- gagGCCGGUUau-CGUGCGGg-UGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 108141 0.68 0.654605
Target:  5'- -cCCGGUCGucgggcggcggcggcGUcGGUAUGCgCGCGCCCg -3'
miRNA:   3'- gaGGCCGGU---------------UA-UCGUGCGgGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 48389 0.68 0.620276
Target:  5'- -aUCGGCgCAAUuGUAaaaGCCCuCGCCCa -3'
miRNA:   3'- gaGGCCG-GUUAuCGUg--CGGGuGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 90384 0.78 0.17877
Target:  5'- aUCgGGCCAAgAGCGCGUCCACGUUg -3'
miRNA:   3'- gAGgCCGGUUaUCGUGCGGGUGCGGg -5'
22971 5' -59.2 NC_005137.2 + 43813 0.76 0.22832
Target:  5'- --aCGGCaCGAgcAGC-CGCCCGCGCCCg -3'
miRNA:   3'- gagGCCG-GUUa-UCGuGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 27399 0.74 0.294366
Target:  5'- gUCCGGCCAAaaguagcggccgcUgcagcgcuguaacAGCugGCCCACGCgCu -3'
miRNA:   3'- gAGGCCGGUU-------------A-------------UCGugCGGGUGCGgG- -5'
22971 5' -59.2 NC_005137.2 + 128616 0.73 0.338581
Target:  5'- -gCCGGUUAAuaguuuguagguUAGCACGCCCACGgCg -3'
miRNA:   3'- gaGGCCGGUU------------AUCGUGCGGGUGCgGg -5'
22971 5' -59.2 NC_005137.2 + 42505 0.73 0.353837
Target:  5'- -aCCGGCgGuAUAGCGCGCUaaucgcuCGCCCg -3'
miRNA:   3'- gaGGCCGgU-UAUCGUGCGGgu-----GCGGG- -5'
22971 5' -59.2 NC_005137.2 + 22402 0.73 0.361645
Target:  5'- -aCCGGCaacAUGGCGCGCCUgACGCUg -3'
miRNA:   3'- gaGGCCGgu-UAUCGUGCGGG-UGCGGg -5'
22971 5' -59.2 NC_005137.2 + 2439 0.69 0.540375
Target:  5'- --gUGGCCGA---CGUGCCCGCGCCCg -3'
miRNA:   3'- gagGCCGGUUaucGUGCGGGUGCGGG- -5'
22971 5' -59.2 NC_005137.2 + 104892 0.69 0.570052
Target:  5'- -aCCcGUCGAUAGCugGgCCCAgGCCa -3'
miRNA:   3'- gaGGcCGGUUAUCGugC-GGGUgCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.