miRNA display CGI


Results 21 - 40 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22972 3' -57.7 NC_005137.2 + 20634 0.66 0.828516
Target:  5'- gGCGUGGugGCGCuCGuuGA-AGAGUa -3'
miRNA:   3'- -CGCGCCugUGCGcGCggCUgUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 21123 0.81 0.152935
Target:  5'- aGCGCGGcaaaACGCGCGCCGcaggcaGCAGAcGCCa -3'
miRNA:   3'- -CGCGCCug--UGCGCGCGGC------UGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 22619 0.75 0.344566
Target:  5'- gGCGUGaGCGCgGUGCaGCCGACGGAGCg -3'
miRNA:   3'- -CGCGCcUGUG-CGCG-CGGCUGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 24107 0.66 0.852625
Target:  5'- gGCGCucGGACGagGUGCGCUGcgcguuuuGCAAAGUg -3'
miRNA:   3'- -CGCG--CCUGUg-CGCGCGGC--------UGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 24466 0.7 0.628493
Target:  5'- uGCGCGGACGCG-GUGgaCuGCAacAAGCCg -3'
miRNA:   3'- -CGCGCCUGUGCgCGCg-GcUGU--UUCGG- -5'
22972 3' -57.7 NC_005137.2 + 28047 0.69 0.648704
Target:  5'- aCGUGGcGCgACGCGCGCUGGgAugcGCCa -3'
miRNA:   3'- cGCGCC-UG-UGCGCGCGGCUgUuu-CGG- -5'
22972 3' -57.7 NC_005137.2 + 31339 0.69 0.658795
Target:  5'- aCGCGGGC-CGguUGCGCCGuauauuACAAcAGCCa -3'
miRNA:   3'- cGCGCCUGuGC--GCGCGGC------UGUU-UCGG- -5'
22972 3' -57.7 NC_005137.2 + 31649 0.76 0.301789
Target:  5'- cGCGCGGACGCGaccacgcugugcauaGCGgaCGACAccGCCg -3'
miRNA:   3'- -CGCGCCUGUGCg--------------CGCg-GCUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 31798 0.72 0.509368
Target:  5'- aGCGUGGucgcguccGCGCGCGUGCacuGACcguuGGCCg -3'
miRNA:   3'- -CGCGCC--------UGUGCGCGCGg--CUGuu--UCGG- -5'
22972 3' -57.7 NC_005137.2 + 32881 0.66 0.836737
Target:  5'- cGCGCGuacGACgACGCGguaGCCGGC--GGCg -3'
miRNA:   3'- -CGCGC---CUG-UGCGCg--CGGCUGuuUCGg -5'
22972 3' -57.7 NC_005137.2 + 34515 0.71 0.558214
Target:  5'- cCGUGGACAuCGCcCGCCGAUuuuGGCa -3'
miRNA:   3'- cGCGCCUGU-GCGcGCGGCUGuu-UCGg -5'
22972 3' -57.7 NC_005137.2 + 34619 0.69 0.679907
Target:  5'- -gGCGGACAauuugauuggcgguuUGCGCGCCGuguGCGAGcgauuacccgacccGCCa -3'
miRNA:   3'- cgCGCCUGU---------------GCGCGCGGC---UGUUU--------------CGG- -5'
22972 3' -57.7 NC_005137.2 + 35554 0.66 0.836737
Target:  5'- gGCGCuugucaaGACACGCacCGCCGGC---GCCa -3'
miRNA:   3'- -CGCGc------CUGUGCGc-GCGGCUGuuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 35642 0.71 0.548323
Target:  5'- gGUGCuGGGCACGCGCaaaauGCCGuu-GAGCg -3'
miRNA:   3'- -CGCG-CCUGUGCGCG-----CGGCuguUUCGg -5'
22972 3' -57.7 NC_005137.2 + 39804 0.68 0.747653
Target:  5'- -gGCGGccaACACGCGUGCaacCAAAcGCCg -3'
miRNA:   3'- cgCGCC---UGUGCGCGCGgcuGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 39967 0.75 0.344566
Target:  5'- gGCGCGGcguuugguuGCACGCGUGuuGGCc--GCCa -3'
miRNA:   3'- -CGCGCC---------UGUGCGCGCggCUGuuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 41616 0.67 0.800196
Target:  5'- cGCuGCGGACagcGCGUGCGCCauguuuaaaauaacGcGCAAAGUUg -3'
miRNA:   3'- -CG-CGCCUG---UGCGCGCGG--------------C-UGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 42169 0.66 0.836737
Target:  5'- uCGUGGAguuggccagcguCGCGUcCGCCGACAGGGaCg -3'
miRNA:   3'- cGCGCCU------------GUGCGcGCGGCUGUUUCgG- -5'
22972 3' -57.7 NC_005137.2 + 42578 0.71 0.558214
Target:  5'- cGCgGCGGACacaunACGUGUcCCGGCGGGGCa -3'
miRNA:   3'- -CG-CGCCUG-----UGCGCGcGGCUGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 42670 0.66 0.828516
Target:  5'- cGgGCGGGCGagcgauuaGCGCGCU-AUAccGCCg -3'
miRNA:   3'- -CgCGCCUGUg-------CGCGCGGcUGUuuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.