miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22972 3' -57.7 NC_005137.2 + 1509 0.67 0.802841
Target:  5'- cGCGCGGcGC-CGaCGCGuuGuuCAAuucGGCCa -3'
miRNA:   3'- -CGCGCC-UGuGC-GCGCggCu-GUU---UCGG- -5'
22972 3' -57.7 NC_005137.2 + 1679 0.67 0.75715
Target:  5'- gGCGCGGucaGCaACGCGCGCaaucuuaguccCGACAuuuCCa -3'
miRNA:   3'- -CGCGCC---UG-UGCGCGCG-----------GCUGUuucGG- -5'
22972 3' -57.7 NC_005137.2 + 1828 0.7 0.628493
Target:  5'- cGCGCGuugcuGAC-CGCGCcgaaaCCGACcGAGCCc -3'
miRNA:   3'- -CGCGC-----CUGuGCGCGc----GGCUGuUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 2588 0.68 0.747653
Target:  5'- gGCGCGGGCACGUcggccaccGCG-UGACAcuucuGGCa -3'
miRNA:   3'- -CGCGCCUGUGCG--------CGCgGCUGUu----UCGg -5'
22972 3' -57.7 NC_005137.2 + 2626 0.66 0.852625
Target:  5'- aCGCGGcGCAUaaauaGCGCGC-GAUAGAGUg -3'
miRNA:   3'- cGCGCC-UGUG-----CGCGCGgCUGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 4003 0.72 0.490327
Target:  5'- -gGCGGGCAaaccaaGCGCuuGCCuGAUggGGCCa -3'
miRNA:   3'- cgCGCCUGUg-----CGCG--CGG-CUGuuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 5072 0.66 0.851849
Target:  5'- uGCGcCGcGACAUugagacgGCGCGUCGACuuaacaGAGGCg -3'
miRNA:   3'- -CGC-GC-CUGUG-------CGCGCGGCUG------UUUCGg -5'
22972 3' -57.7 NC_005137.2 + 5372 0.68 0.718605
Target:  5'- uGCGCGGuuACGCGUuaaCGcACGucGCCa -3'
miRNA:   3'- -CGCGCCugUGCGCGcg-GC-UGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 5481 0.73 0.435348
Target:  5'- aCGCGG-CAC-CGUGCCcGCAGAGCUg -3'
miRNA:   3'- cGCGCCuGUGcGCGCGGcUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 7017 0.7 0.608293
Target:  5'- aCGUGGcGCACGCGCGUC-AC--GGCCu -3'
miRNA:   3'- cGCGCC-UGUGCGCGCGGcUGuuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 7183 0.66 0.815005
Target:  5'- uUGCGGcgacgaggccgugacGCGCGUGCGCC-ACGuuguGCCc -3'
miRNA:   3'- cGCGCC---------------UGUGCGCGCGGcUGUuu--CGG- -5'
22972 3' -57.7 NC_005137.2 + 9436 0.66 0.828516
Target:  5'- cGUGUugauuGGACAacUGCGCGCgCG-CAAcAGCCg -3'
miRNA:   3'- -CGCG-----CCUGU--GCGCGCG-GCuGUU-UCGG- -5'
22972 3' -57.7 NC_005137.2 + 9473 0.67 0.774889
Target:  5'- -gGCGGACAagaGCGgGUuguuugugcucaaCGGCGGGGCUg -3'
miRNA:   3'- cgCGCCUGUg--CGCgCG-------------GCUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 11306 0.69 0.648704
Target:  5'- gGCGUGGugGCACGCGCaGCCaACAAAcGUUu -3'
miRNA:   3'- -CGCGCC--UGUGCGCG-CGGcUGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 11414 0.71 0.528713
Target:  5'- -aGCGGACGucaGCGCGCUGGaggGGAGCa -3'
miRNA:   3'- cgCGCCUGUg--CGCGCGGCUg--UUUCGg -5'
22972 3' -57.7 NC_005137.2 + 12149 0.66 0.820122
Target:  5'- aCGaaGcCACGCcUGCCGAUAAAGCUa -3'
miRNA:   3'- cGCgcCuGUGCGcGCGGCUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 13629 0.66 0.837549
Target:  5'- -gGCGGACgugaaugggugauugACGCcgauuuuaaagauuGCGCCaACAAGGCUg -3'
miRNA:   3'- cgCGCCUG---------------UGCG--------------CGCGGcUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 13702 0.68 0.735161
Target:  5'- aCGUGGGCGCgaccGCGUuguugcuauuuuuuGCCGACAAAgaagacGCCg -3'
miRNA:   3'- cGCGCCUGUG----CGCG--------------CGGCUGUUU------CGG- -5'
22972 3' -57.7 NC_005137.2 + 18311 0.73 0.444267
Target:  5'- cGCGCGGGCAU-CGCGaCUGcACGGAcGCCa -3'
miRNA:   3'- -CGCGCCUGUGcGCGC-GGC-UGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 18957 0.75 0.329592
Target:  5'- aGCGUucuGGuCGCGCGCaGCCGACuuGGCg -3'
miRNA:   3'- -CGCG---CCuGUGCGCG-CGGCUGuuUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.