miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22972 3' -57.7 NC_005137.2 + 87988 0.66 0.839974
Target:  5'- cGCGUGGuuGCGgauaGCuucgauaaugggauuGCCGGCGcGGCCa -3'
miRNA:   3'- -CGCGCCugUGCg---CG---------------CGGCUGUuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 42169 0.66 0.836737
Target:  5'- uCGUGGAguuggccagcguCGCGUcCGCCGACAGGGaCg -3'
miRNA:   3'- cGCGCCU------------GUGCGcGCGGCUGUUUCgG- -5'
22972 3' -57.7 NC_005137.2 + 97486 0.66 0.834289
Target:  5'- cGCGCaGGugGCACGUGUaauacuuggaccaaGCCG-CAGAcGCCa -3'
miRNA:   3'- -CGCG-CC--UGUGCGCG--------------CGGCuGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 2626 0.66 0.852625
Target:  5'- aCGCGGcGCAUaaauaGCGCGC-GAUAGAGUg -3'
miRNA:   3'- cGCGCC-UGUG-----CGCGCGgCUGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 67549 0.66 0.828516
Target:  5'- -gGCGGcACaaACGCGCGCCGAgcGGGa- -3'
miRNA:   3'- cgCGCC-UG--UGCGCGCGGCUguUUCgg -5'
22972 3' -57.7 NC_005137.2 + 20634 0.66 0.828516
Target:  5'- gGCGUGGugGCGCuCGuuGA-AGAGUa -3'
miRNA:   3'- -CGCGCCugUGCGcGCggCUgUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 88041 0.66 0.820122
Target:  5'- -gGCGGGCcaccACGUGgGaCGGCGuGGCCa -3'
miRNA:   3'- cgCGCCUG----UGCGCgCgGCUGUuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 96356 0.66 0.820122
Target:  5'- uCGUGG-UGCGUGCuuacGCCGcgACGGGGCCa -3'
miRNA:   3'- cGCGCCuGUGCGCG----CGGC--UGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 32881 0.66 0.836737
Target:  5'- cGCGCGuacGACgACGCGguaGCCGGC--GGCg -3'
miRNA:   3'- -CGCGC---CUG-UGCGCg--CGGCUGuuUCGg -5'
22972 3' -57.7 NC_005137.2 + 35554 0.66 0.836737
Target:  5'- gGCGCuugucaaGACACGCacCGCCGGC---GCCa -3'
miRNA:   3'- -CGCGc------CUGUGCGc-GCGGCUGuuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 100028 0.66 0.828516
Target:  5'- uGCGCaaGCACGCG-GuCCGACGcGGCg -3'
miRNA:   3'- -CGCGccUGUGCGCgC-GGCUGUuUCGg -5'
22972 3' -57.7 NC_005137.2 + 130854 0.66 0.811561
Target:  5'- cGCGuUGGACGCGCagcccGCGCCuGAauuguacGCCg -3'
miRNA:   3'- -CGC-GCCUGUGCG-----CGCGG-CUguuu---CGG- -5'
22972 3' -57.7 NC_005137.2 + 112889 0.66 0.844775
Target:  5'- aCGCGGGC-UGCGCGuacCCGACGcuAGUUu -3'
miRNA:   3'- cGCGCCUGuGCGCGC---GGCUGUu-UCGG- -5'
22972 3' -57.7 NC_005137.2 + 13629 0.66 0.837549
Target:  5'- -gGCGGACgugaaugggugauugACGCcgauuuuaaagauuGCGCCaACAAGGCUg -3'
miRNA:   3'- cgCGCCUG---------------UGCG--------------CGCGGcUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 51698 0.66 0.852625
Target:  5'- uUGCGGcACcguuGCGCGCGUCGG--AAGCg -3'
miRNA:   3'- cGCGCC-UG----UGCGCGCGGCUguUUCGg -5'
22972 3' -57.7 NC_005137.2 + 24107 0.66 0.852625
Target:  5'- gGCGCucGGACGagGUGCGCUGcgcguuuuGCAAAGUg -3'
miRNA:   3'- -CGCG--CCUGUg-CGCGCGGC--------UGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 5072 0.66 0.851849
Target:  5'- uGCGcCGcGACAUugagacgGCGCGUCGACuuaacaGAGGCg -3'
miRNA:   3'- -CGC-GC-CUGUG-------CGCGCGGCUG------UUUCGg -5'
22972 3' -57.7 NC_005137.2 + 55947 0.66 0.844775
Target:  5'- gGCGCcugaACAcCGCGCGuuGGCuuGGCg -3'
miRNA:   3'- -CGCGcc--UGU-GCGCGCggCUGuuUCGg -5'
22972 3' -57.7 NC_005137.2 + 100230 0.66 0.852625
Target:  5'- aGCaCGuGCGCGCGcCGCgGcACAAAGCa -3'
miRNA:   3'- -CGcGCcUGUGCGC-GCGgC-UGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 98145 0.66 0.852625
Target:  5'- -gGCGGGCGCacccacgccGCGCGCCcguuuuGCCu -3'
miRNA:   3'- cgCGCCUGUG---------CGCGCGGcuguuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.