miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22972 3' -57.7 NC_005137.2 + 63012 0.7 0.608293
Target:  5'- gGUGCGG-CGCcgGCGUGUCGGCA-AGCUu -3'
miRNA:   3'- -CGCGCCuGUG--CGCGCGGCUGUuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 108065 0.71 0.538487
Target:  5'- cGCGUGGaACACGCGa--CG-CGGGGCCa -3'
miRNA:   3'- -CGCGCC-UGUGCGCgcgGCuGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 34515 0.71 0.558214
Target:  5'- cCGUGGACAuCGCcCGCCGAUuuuGGCa -3'
miRNA:   3'- cGCGCCUGU-GCGcGCGGCUGuu-UCGg -5'
22972 3' -57.7 NC_005137.2 + 63303 0.71 0.558214
Target:  5'- uCGCGGGCacaACGCGCGCCcucacuACAAuGUCa -3'
miRNA:   3'- cGCGCCUG---UGCGCGCGGc-----UGUUuCGG- -5'
22972 3' -57.7 NC_005137.2 + 78743 0.71 0.568155
Target:  5'- uGCGCGGucuGCcCGgGCGCCGuuuguaacCAGAGCUu -3'
miRNA:   3'- -CGCGCC---UGuGCgCGCGGCu-------GUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 95484 0.71 0.57514
Target:  5'- -gGuCGGAUGCGCGCcgcacgggcgcaucGCUGACGuGGCCg -3'
miRNA:   3'- cgC-GCCUGUGCGCG--------------CGGCUGUuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 110620 0.7 0.598215
Target:  5'- cCGUGGugACGgccgugcacaaaCGCGCCGACGGcguuuGGCUu -3'
miRNA:   3'- cGCGCCugUGC------------GCGCGGCUGUU-----UCGG- -5'
22972 3' -57.7 NC_005137.2 + 74099 0.7 0.605268
Target:  5'- uUGCGGACGCauuuGCacguguuggcuuucGCGCCGGCAcGGCa -3'
miRNA:   3'- cGCGCCUGUG----CG--------------CGCGGCUGUuUCGg -5'
22972 3' -57.7 NC_005137.2 + 7017 0.7 0.608293
Target:  5'- aCGUGGcGCACGCGCGUC-AC--GGCCu -3'
miRNA:   3'- cGCGCC-UGUGCGCGCGGcUGuuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 75971 0.71 0.528713
Target:  5'- aCGCGG-CGCGCGUugguGCaCGGCGcacGGGCCa -3'
miRNA:   3'- cGCGCCuGUGCGCG----CG-GCUGU---UUCGG- -5'
22972 3' -57.7 NC_005137.2 + 98872 0.71 0.528713
Target:  5'- uGUGUGGGC-UGCGCGCaaa-GAAGCCg -3'
miRNA:   3'- -CGCGCCUGuGCGCGCGgcugUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 96421 0.71 0.528713
Target:  5'- cGCGCGGcgACGCGCcCGCCG-CGuuGCg -3'
miRNA:   3'- -CGCGCC--UGUGCGcGCGGCuGUuuCGg -5'
22972 3' -57.7 NC_005137.2 + 31649 0.76 0.301789
Target:  5'- cGCGCGGACGCGaccacgcugugcauaGCGgaCGACAccGCCg -3'
miRNA:   3'- -CGCGCCUGUGCg--------------CGCg-GCUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 57457 0.74 0.384103
Target:  5'- -gGUGGACGC-CGCGCa-ACGAGGCCa -3'
miRNA:   3'- cgCGCCUGUGcGCGCGgcUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 5481 0.73 0.435348
Target:  5'- aCGCGG-CAC-CGUGCCcGCAGAGCUg -3'
miRNA:   3'- cGCGCCuGUGcGCGCGGcUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 95645 0.73 0.443371
Target:  5'- cGCGUGcGC-CGUGCGCCGACGGGcaagugcGCCu -3'
miRNA:   3'- -CGCGCcUGuGCGCGCGGCUGUUU-------CGG- -5'
22972 3' -57.7 NC_005137.2 + 18311 0.73 0.444267
Target:  5'- cGCGCGGGCAU-CGCGaCUGcACGGAcGCCa -3'
miRNA:   3'- -CGCGCCUGUGcGCGC-GGC-UGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 96289 0.72 0.480931
Target:  5'- aCuCGGACGCGUGCauucGCCGACAc-GCCg -3'
miRNA:   3'- cGcGCCUGUGCGCG----CGGCUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 4003 0.72 0.490327
Target:  5'- -gGCGGGCAaaccaaGCGCuuGCCuGAUggGGCCa -3'
miRNA:   3'- cgCGCCUGUg-----CGCG--CGG-CUGuuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 64707 0.72 0.499808
Target:  5'- aGCGCGuGACGuCG-GCGCCGu--AGGCCu -3'
miRNA:   3'- -CGCGC-CUGU-GCgCGCGGCuguUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.