miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22972 3' -57.7 NC_005137.2 + 130616 1.14 0.000872
Target:  5'- aGCGCGGACACGCGCGCCGACAAAGCCa -3'
miRNA:   3'- -CGCGCCUGUGCGCGCGGCUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 108316 0.83 0.115456
Target:  5'- aGgGCGGGCGCGCGCauaCCGACGccGCCg -3'
miRNA:   3'- -CgCGCCUGUGCGCGc--GGCUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 21123 0.81 0.152935
Target:  5'- aGCGCGGcaaaACGCGCGCCGcaggcaGCAGAcGCCa -3'
miRNA:   3'- -CGCGCCug--UGCGCGCGGC------UGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 31649 0.76 0.301789
Target:  5'- cGCGCGGACGCGaccacgcugugcauaGCGgaCGACAccGCCg -3'
miRNA:   3'- -CGCGCCUGUGCg--------------CGCg-GCUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 18957 0.75 0.329592
Target:  5'- aGCGUucuGGuCGCGCGCaGCCGACuuGGCg -3'
miRNA:   3'- -CGCG---CCuGUGCGCG-CGGCUGuuUCGg -5'
22972 3' -57.7 NC_005137.2 + 88169 0.75 0.329592
Target:  5'- -gGCGGugGC-CGCGCCGGCAAucCCa -3'
miRNA:   3'- cgCGCCugUGcGCGCGGCUGUUucGG- -5'
22972 3' -57.7 NC_005137.2 + 22619 0.75 0.344566
Target:  5'- gGCGUGaGCGCgGUGCaGCCGACGGAGCg -3'
miRNA:   3'- -CGCGCcUGUG-CGCG-CGGCUGUUUCGg -5'
22972 3' -57.7 NC_005137.2 + 39967 0.75 0.344566
Target:  5'- gGCGCGGcguuugguuGCACGCGUGuuGGCc--GCCa -3'
miRNA:   3'- -CGCGCC---------UGUGCGCGCggCUGuuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 48492 0.74 0.384103
Target:  5'- aUGCaGAUACGCacGUGCCGcCAAGGCCg -3'
miRNA:   3'- cGCGcCUGUGCG--CGCGGCuGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 57457 0.74 0.384103
Target:  5'- -gGUGGACGC-CGCGCa-ACGAGGCCa -3'
miRNA:   3'- cgCGCCUGUGcGCGCGgcUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 5481 0.73 0.435348
Target:  5'- aCGCGG-CAC-CGUGCCcGCAGAGCUg -3'
miRNA:   3'- cGCGCCuGUGcGCGCGGcUGUUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 95645 0.73 0.443371
Target:  5'- cGCGUGcGC-CGUGCGCCGACGGGcaagugcGCCu -3'
miRNA:   3'- -CGCGCcUGuGCGCGCGGCUGUUU-------CGG- -5'
22972 3' -57.7 NC_005137.2 + 18311 0.73 0.444267
Target:  5'- cGCGCGGGCAU-CGCGaCUGcACGGAcGCCa -3'
miRNA:   3'- -CGCGCCUGUGcGCGC-GGC-UGUUU-CGG- -5'
22972 3' -57.7 NC_005137.2 + 98327 0.72 0.471624
Target:  5'- cGCGCGuaucuuaucuguGGC-CGCGCGCCGGCuauaaAAGGCg -3'
miRNA:   3'- -CGCGC------------CUGuGCGCGCGGCUG-----UUUCGg -5'
22972 3' -57.7 NC_005137.2 + 96289 0.72 0.480931
Target:  5'- aCuCGGACGCGUGCauucGCCGACAc-GCCg -3'
miRNA:   3'- cGcGCCUGUGCGCG----CGGCUGUuuCGG- -5'
22972 3' -57.7 NC_005137.2 + 4003 0.72 0.490327
Target:  5'- -gGCGGGCAaaccaaGCGCuuGCCuGAUggGGCCa -3'
miRNA:   3'- cgCGCCUGUg-----CGCG--CGG-CUGuuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 64707 0.72 0.499808
Target:  5'- aGCGCGuGACGuCG-GCGCCGu--AGGCCu -3'
miRNA:   3'- -CGCGC-CUGU-GCgCGCGGCuguUUCGG- -5'
22972 3' -57.7 NC_005137.2 + 31798 0.72 0.509368
Target:  5'- aGCGUGGucgcguccGCGCGCGUGCacuGACcguuGGCCg -3'
miRNA:   3'- -CGCGCC--------UGUGCGCGCGg--CUGuu--UCGG- -5'
22972 3' -57.7 NC_005137.2 + 50231 0.72 0.519005
Target:  5'- cCGUGGAgGCGCGCGUCaAU--GGCCa -3'
miRNA:   3'- cGCGCCUgUGCGCGCGGcUGuuUCGG- -5'
22972 3' -57.7 NC_005137.2 + 75971 0.71 0.528713
Target:  5'- aCGCGG-CGCGCGUugguGCaCGGCGcacGGGCCa -3'
miRNA:   3'- cGCGCCuGUGCGCG----CG-GCUGU---UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.