Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22972 | 5' | -52.2 | NC_005137.2 | + | 18644 | 0.66 | 0.974058 |
|
Target: 5'- uGGGCUUAAACuugACGuCGGCACAg---- -3' miRNA: 3'- gCUCGAGUUUG---UGC-GCCGUGUgaaca -5' |
|||||||
| 22972 | 5' | -52.2 | NC_005137.2 | + | 2591 | 0.66 | 0.974058 |
|
Target: 5'- uCGGGCgCGGGCACGuCGGC-CACcgcgUGa -3' miRNA: 3'- -GCUCGaGUUUGUGC-GCCGuGUGa---ACa -5' |
|||||||
| 22972 | 5' | -52.2 | NC_005137.2 | + | 100026 | 0.66 | 0.974058 |
|
Target: 5'- gGuGCgCAAGCACGCGGUccgACGCg--- -3' miRNA: 3'- gCuCGaGUUUGUGCGCCG---UGUGaaca -5' |
|||||||
| 22972 | 5' | -52.2 | NC_005137.2 | + | 26802 | 0.66 | 0.9767 |
|
Target: 5'- uCGuGUUCGcGCuGCGaCGcGCACGCUUGUa -3' miRNA: 3'- -GCuCGAGUuUG-UGC-GC-CGUGUGAACA- -5' |
|||||||
| 22972 | 5' | -52.2 | NC_005137.2 | + | 129526 | 0.66 | 0.9767 |
|
Target: 5'- aCGuGCUggCGAGCAuUGUGGCGCGCaUUGa -3' miRNA: 3'- -GCuCGA--GUUUGU-GCGCCGUGUG-AACa -5' |
|||||||
| 22972 | 5' | -52.2 | NC_005137.2 | + | 126058 | 0.66 | 0.9767 |
|
Target: 5'- -uGGCUgGAGCugGCuGGCugGCUg-- -3' miRNA: 3'- gcUCGAgUUUGugCG-CCGugUGAaca -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home