miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22973 3' -49.2 NC_005137.2 + 130892 1.09 0.00998
Target:  5'- cGGACGCGCCGCAGUUUUACGUACAAAu -3'
miRNA:   3'- -CCUGCGCGGCGUCAAAAUGCAUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 100159 0.66 0.997489
Target:  5'- cGGGCGCGCCGggucguCAGcUUUgauuucccaaUGCGUcGCAAAa -3'
miRNA:   3'- -CCUGCGCGGC------GUC-AAA----------AUGCA-UGUUU- -5'
22973 3' -49.2 NC_005137.2 + 106842 0.66 0.99701
Target:  5'- uGGAguUGCGCaCGCAGU---ACGcGCAGAu -3'
miRNA:   3'- -CCU--GCGCG-GCGUCAaaaUGCaUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 115307 0.66 0.996458
Target:  5'- cGGGCgauuGCGCCGCGGUUgaACGcugAgGAGc -3'
miRNA:   3'- -CCUG----CGCGGCGUCAAaaUGCa--UgUUU- -5'
22973 3' -49.2 NC_005137.2 + 112026 0.66 0.995824
Target:  5'- uGACGCGCUGCG-----ACGUGCu-- -3'
miRNA:   3'- cCUGCGCGGCGUcaaaaUGCAUGuuu -5'
22973 3' -49.2 NC_005137.2 + 4213 0.66 0.995824
Target:  5'- -cGCGCGCUGCuucaaaACGUGCAAu -3'
miRNA:   3'- ccUGCGCGGCGucaaaaUGCAUGUUu -5'
22973 3' -49.2 NC_005137.2 + 22539 0.66 0.995824
Target:  5'- --cUGgGCCGUAGUUUgguCGUACAc- -3'
miRNA:   3'- ccuGCgCGGCGUCAAAau-GCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 21206 0.67 0.994279
Target:  5'- uGGAUGCuUCGCAGaguUUUUACGUggGCGAc -3'
miRNA:   3'- -CCUGCGcGGCGUC---AAAAUGCA--UGUUu -5'
22973 3' -49.2 NC_005137.2 + 47236 0.67 0.990878
Target:  5'- aGACuGCGCCGCugcggu-CGUACAAAc -3'
miRNA:   3'- cCUG-CGCGGCGucaaaauGCAUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 79908 0.67 0.989819
Target:  5'- uGAgGCGCCGCAaGUggucaaugcgUAUGUGCAc- -3'
miRNA:   3'- cCUgCGCGGCGU-CAaa--------AUGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 28471 0.74 0.813116
Target:  5'- -aACGCGuuGCGGUcgUUUugGUGCAAu -3'
miRNA:   3'- ccUGCGCggCGUCA--AAAugCAUGUUu -5'
22973 3' -49.2 NC_005137.2 + 104708 0.73 0.880599
Target:  5'- -aGCGCGCCGCcGUUguacGCGUACGc- -3'
miRNA:   3'- ccUGCGCGGCGuCAAaa--UGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 73126 0.7 0.95989
Target:  5'- cGGCGuCGUCGUAGUcgUccACGUACAAAg -3'
miRNA:   3'- cCUGC-GCGGCGUCAaaA--UGCAUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 77101 0.69 0.967031
Target:  5'- uGACGCGCaCGUAGUagu-CGUACGc- -3'
miRNA:   3'- cCUGCGCG-GCGUCAaaauGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 106582 0.69 0.969932
Target:  5'- uGGACauuuacgGCGCCGCGGUguugACGaUGCGu- -3'
miRNA:   3'- -CCUG-------CGCGGCGUCAaaa-UGC-AUGUuu -5'
22973 3' -49.2 NC_005137.2 + 122551 0.69 0.975982
Target:  5'- cGGCGCGUCGCAa--UUGCGUaaGCGAGu -3'
miRNA:   3'- cCUGCGCGGCGUcaaAAUGCA--UGUUU- -5'
22973 3' -49.2 NC_005137.2 + 72288 0.79 0.583024
Target:  5'- uGGACGUGCCGCAGcgUUaggcgaACGUACGc- -3'
miRNA:   3'- -CCUGCGCGGCGUCaaAA------UGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 92842 0.66 0.99701
Target:  5'- cGACGCGCC-CAGUUUUu--UACAu- -3'
miRNA:   3'- cCUGCGCGGcGUCAAAAugcAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 24430 0.67 0.993349
Target:  5'- -aGCGCGCCGUucg-UUACaGUGCAAu -3'
miRNA:   3'- ccUGCGCGGCGucaaAAUG-CAUGUUu -5'
22973 3' -49.2 NC_005137.2 + 48906 0.67 0.993349
Target:  5'- cGAuCGCGCCGCcuuGUUcgGCG-ACAAGa -3'
miRNA:   3'- cCU-GCGCGGCGu--CAAaaUGCaUGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.