miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22973 3' -49.2 NC_005137.2 + 122551 0.69 0.975982
Target:  5'- cGGCGCGUCGCAa--UUGCGUaaGCGAGu -3'
miRNA:   3'- cCUGCGCGGCGUcaaAAUGCA--UGUUU- -5'
22973 3' -49.2 NC_005137.2 + 101168 0.69 0.975982
Target:  5'- uGGGCGUugccauguacgGCCGCGGUUggacagGCGUgGCAGg -3'
miRNA:   3'- -CCUGCG-----------CGGCGUCAAaa----UGCA-UGUUu -5'
22973 3' -49.2 NC_005137.2 + 112847 0.69 0.975982
Target:  5'- cGACGUGcCCGC-GUUUaACGUGCGu- -3'
miRNA:   3'- cCUGCGC-GGCGuCAAAaUGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 26519 0.69 0.970243
Target:  5'- cGGCGCugGCUGC-GUUUUGCGUGCc-- -3'
miRNA:   3'- cCUGCG--CGGCGuCAAAAUGCAUGuuu -5'
22973 3' -49.2 NC_005137.2 + 106582 0.69 0.969932
Target:  5'- uGGACauuuacgGCGCCGCGGUguugACGaUGCGu- -3'
miRNA:   3'- -CCUG-------CGCGGCGUCAaaa-UGC-AUGUuu -5'
22973 3' -49.2 NC_005137.2 + 110725 0.69 0.967031
Target:  5'- uGGGCGCGCCaagacGCAGg--UGCGgGCGc- -3'
miRNA:   3'- -CCUGCGCGG-----CGUCaaaAUGCaUGUuu -5'
22973 3' -49.2 NC_005137.2 + 77101 0.69 0.967031
Target:  5'- uGACGCGCaCGUAGUagu-CGUACGc- -3'
miRNA:   3'- cCUGCGCG-GCGUCAaaauGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 73126 0.7 0.95989
Target:  5'- cGGCGuCGUCGUAGUcgUccACGUACAAAg -3'
miRNA:   3'- cCUGC-GCGGCGUCAaaA--UGCAUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 2519 0.7 0.955946
Target:  5'- cGGAuUGUGCCGuCGGg--UACGUACAc- -3'
miRNA:   3'- -CCU-GCGCGGC-GUCaaaAUGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 165 0.7 0.951747
Target:  5'- uGACGCGCCGCuGUUcacuggccccGCGUACu-- -3'
miRNA:   3'- cCUGCGCGGCGuCAAaa--------UGCAUGuuu -5'
22973 3' -49.2 NC_005137.2 + 18404 0.7 0.947288
Target:  5'- cGGACgcgGCGCCGCAGUcgaacgACGcGCAc- -3'
miRNA:   3'- -CCUG---CGCGGCGUCAaaa---UGCaUGUuu -5'
22973 3' -49.2 NC_005137.2 + 104708 0.73 0.880599
Target:  5'- -aGCGCGCCGCcGUUguacGCGUACGc- -3'
miRNA:   3'- ccUGCGCGGCGuCAAaa--UGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 28471 0.74 0.813116
Target:  5'- -aACGCGuuGCGGUcgUUUugGUGCAAu -3'
miRNA:   3'- ccUGCGCggCGUCA--AAAugCAUGUUu -5'
22973 3' -49.2 NC_005137.2 + 7848 0.75 0.764629
Target:  5'- -cAUGCGCCGCAGgcaUUACGUGCc-- -3'
miRNA:   3'- ccUGCGCGGCGUCaa-AAUGCAUGuuu -5'
22973 3' -49.2 NC_005137.2 + 108723 0.77 0.702178
Target:  5'- cGGGCGCGCCGCcgauc-ACGUACAu- -3'
miRNA:   3'- -CCUGCGCGGCGucaaaaUGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 72288 0.79 0.583024
Target:  5'- uGGACGUGCCGCAGcgUUaggcgaACGUACGc- -3'
miRNA:   3'- -CCUGCGCGGCGUCaaAA------UGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 130892 1.09 0.00998
Target:  5'- cGGACGCGCCGCAGUUUUACGUACAAAu -3'
miRNA:   3'- -CCUGCGCGGCGUCAAAAUGCAUGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.