Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23026 | 5' | -59.7 | NC_005178.1 | + | 28288 | 0.66 | 0.347212 |
Target: 5'- cGGCCUggauagCgGCGGCGCcgcucaggagcgUGCCGCCa-GCa -3' miRNA: 3'- -UCGGAa-----G-CGCCGCG------------AUGGCGGaaCGa -5' |
|||||||
23026 | 5' | -59.7 | NC_005178.1 | + | 29106 | 0.68 | 0.270363 |
Target: 5'- cGCCUg-GCGGCGaCUacuggACCGCgUUUGCUa -3' miRNA: 3'- uCGGAagCGCCGC-GA-----UGGCG-GAACGA- -5' |
|||||||
23026 | 5' | -59.7 | NC_005178.1 | + | 30339 | 0.66 | 0.330667 |
Target: 5'- uAGCCgcaGCa-CGCUGCCGCCgccGCUg -3' miRNA: 3'- -UCGGaagCGccGCGAUGGCGGaa-CGA- -5' |
|||||||
23026 | 5' | -59.7 | NC_005178.1 | + | 31637 | 0.73 | 0.112878 |
Target: 5'- aGGCCg--GCGGCGgUACUGCCUUGa- -3' miRNA: 3'- -UCGGaagCGCCGCgAUGGCGGAACga -5' |
|||||||
23026 | 5' | -59.7 | NC_005178.1 | + | 32731 | 0.68 | 0.250142 |
Target: 5'- uGGCCgacCGUGGauaGCUGCCGCauaacgUGCg -3' miRNA: 3'- -UCGGaa-GCGCCg--CGAUGGCGga----ACGa -5' |
|||||||
23026 | 5' | -59.7 | NC_005178.1 | + | 35558 | 0.67 | 0.31471 |
Target: 5'- uAGaCCUUCGCcggguacGCGCUACCGUUgaUGCg -3' miRNA: 3'- -UC-GGAAGCGc------CGCGAUGGCGGa-ACGa -5' |
|||||||
23026 | 5' | -59.7 | NC_005178.1 | + | 37128 | 0.69 | 0.219233 |
Target: 5'- cGCCa--GCGaGUGCUGCCGCCUcGUc -3' miRNA: 3'- uCGGaagCGC-CGCGAUGGCGGAaCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home