Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23028 | 3' | -57.6 | NC_005178.1 | + | 20578 | 0.7 | 0.26684 |
Target: 5'- -gGCGCCCacuucgccgggucgGGGuuACCGGGGGCGGCGa- -3' miRNA: 3'- caUGCGGG--------------CCU--UGGUCCUCGCUGUgc -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 18100 | 0.71 | 0.253399 |
Target: 5'- -aGCGCCUGGcccAGCCcgccauggugcuguGGGAGCGugGCa -3' miRNA: 3'- caUGCGGGCC---UUGG--------------UCCUCGCugUGc -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 7339 | 0.71 | 0.236144 |
Target: 5'- --uCGCCUGGAGCCGacaGAGgGGCGCGu -3' miRNA: 3'- cauGCGGGCCUUGGUc--CUCgCUGUGC- -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 31318 | 0.71 | 0.230007 |
Target: 5'- aUGCGCCUGGcgccgcGCCGGGAGUucGAgGCGa -3' miRNA: 3'- cAUGCGGGCCu-----UGGUCCUCG--CUgUGC- -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 35604 | 0.72 | 0.212402 |
Target: 5'- ---gGCCCGGAAgCuGGGGCGACGg- -3' miRNA: 3'- caugCGGGCCUUgGuCCUCGCUGUgc -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 17183 | 0.74 | 0.144905 |
Target: 5'- -cACGCCUGGAugugcuCCAGGAcauccGCGACGCc -3' miRNA: 3'- caUGCGGGCCUu-----GGUCCU-----CGCUGUGc -5' |
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23028 | 3' | -57.6 | NC_005178.1 | + | 8287 | 1.08 | 0.000479 |
Target: 5'- gGUACGCCCGGAACCAGGAGCGACACGu -3' miRNA: 3'- -CAUGCGGGCCUUGGUCCUCGCUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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